JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHRS3_chr1_12562910_12623210	0/0	t0028	1295	3	3	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0029	1293	2	0	0	1	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0030	1298	2	0	0	2	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0031	1300	2	0	1	0	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0032	1300	2	0	0	2	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0033	1291	2	0	0	2	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0034	1293	2	1	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0035	1293	2	0	0	1	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0036	1295	2	0	1	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0037	1297	2	0	0	2	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0038	1300	2	0	1	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0039	1293	2	1	0	0	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0040	1294	2	2	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0041	1294	2	0	2	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0042	1295	2	1	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0043	1295	2	0	0	2	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0044	1296	2	0	0	2	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0045	1300	2	0	2	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0046	1299	2	0	1	0	1	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0047	1300	2	2	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0048	1301	2	0	0	2	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0049	1295	2	0	1	0	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0050	1292	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0051	1292	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0052	1293	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0053	1295	1	0	0	0	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0054	1293	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0055	1294	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0056	1296	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0057	1296	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0058	1299	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0059	1301	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0060	1290	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0061	1292	1	0	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0062	1293	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0063	1295	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0064	1297	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0065	1294	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0066	1295	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0067	1295	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0068	1297	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0069	1296	1	0	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0070	1296	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0071	1297	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0072	1298	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0073	1299	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0074	1301	1	0	0	0	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0075	1301	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0076	1293	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0077	1294	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210