JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHRS3_chr1_12562910_12623210	0/0	t0078	1296	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0079	1297	1	0	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0080	1295	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0081	1295	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0082	1296	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0083	1296	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0084	1297	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0085	1297	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0086	1298	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0087	1300	1	0	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0088	1300	1	0	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0089	1294	1	0	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0090	1296	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0091	1296	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0092	1296	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0093	1297	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0094	1297	1	0	0	1	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0095	1292	1	0	0	0	1	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0096	1293	1	1	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0097	1299	1	0	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0098	1292	1	0	0	0	1	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS4L2_chr14_23983929_24011403	0/0	t0001	560	27	0	14	2	3	8	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4L2_chr14_23983929_24011403	0/1	t0002	560	2	0	0	0	1	0	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4L2_chr14_23983929_24011403	0/0	t0003	560	1	0	1	0	0	0	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4L2_chr14_23983929_24011403	1/0	t0004	560	1	0	0	0	0	0	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4L2_chr14_23983929_24011403	0/0	t0005	560	1	0	1	0	0	0	copy fasta	DHRS4L2	chr14	23983929	24011403
DHRS4_chr14_23948770_23974279	0/0	t0001	428	88	9	29	30	6	14	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0002	428	38	9	6	21	1	1	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0003	428	24	3	3	16	0	2	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0004	428	23	23	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0005	20	22	0	6	12	1	3	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0006	428	17	3	0	11	1	2	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0007	428	14	13	0	0	1	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0008	428	10	7	2	1	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0009	428	9	0	7	0	0	2	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0010	428	8	7	1	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0011	428	5	4	1	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0012	20	3	3	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0013	428	2	1	1	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0014	428	1	1	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0015	428	1	0	0	1	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	1/0	t0016	428	1	0	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS4_chr14_23948770_23974279	0/0	t0017	428	1	1	0	0	0	0	copy fasta	DHRS4	chr14	23948770	23974279
DHRS7B_chr17_21121964_21196420	1/1	t0001	276	380	88	62	179	11	38	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	t0002	276	1	0	0	1	0	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7B_chr17_21121964_21196420	0/0	t0003	276	1	0	0	0	1	0	copy fasta	DHRS7B	chr17	21121964	21196420
DHRS7C_chr17_9766438_9796592	1/1	t0001	359	421	97	80	182	14	46	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	t0002	359	1	1	0	0	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	t0003	359	1	0	0	1	0	0	copy fasta	DHRS7C	chr17	9766438	9796592
DHRS7C_chr17_9766438_9796592	0/0	t0004	359	1	0	0	1	0	0	copy fasta	DHRS7C	chr17	9766438	9796592