JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHRS7_chr14_60139119_60170398	1/1	t0001	937	231	38	53	100	15	23	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	t0002	937	128	43	16	53	1	15	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	t0003	937	25	0	0	25	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	t0004	937	1	0	0	1	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	t0005	937	1	0	1	0	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	t0006	937	1	0	0	1	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS7_chr14_60139119_60170398	0/0	t0007	937	1	1	0	0	0	0	copy fasta	DHRS7	chr14	60139119	60170398
DHRS9_chr2_169064563_169101167	1/1	t0001	615	263	47	46	123	13	32	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	t0002	615	124	36	24	52	3	9	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	t0003	615	5	5	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	t0004	615	2	2	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	t0005	615	1	0	0	1	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	t0006	615	1	1	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	t0007	615	1	0	0	0	0	1	copy fasta	DHRS9	chr2	169064563	169101167
DHRS9_chr2_169064563_169101167	0/0	t0008	615	1	1	0	0	0	0	copy fasta	DHRS9	chr2	169064563	169101167
DHRSX_chrX_2214506_2505976	0/0	t0001	1587	20	3	4	10	0	3	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	1/1	t0002	1587	7	0	3	1	0	1	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0003	1587	6	0	2	3	1	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0004	1587	4	4	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0005	1587	3	3	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0006	1587	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0007	1587	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0008	1587	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0009	1587	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0010	1587	1	0	0	1	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0011	1587	1	0	0	0	0	1	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0012	1587	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0013	1584	1	0	1	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0014	1590	1	0	1	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHRSX_chrX_2214506_2505976	0/0	t0015	1584	1	1	0	0	0	0	copy fasta	DHRSX	chrX	2214506	2505976
DHTKD1_chr10_12063954_12128221	0/1	t0001	2415	105	10	21	51	5	17	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0002	2415	96	26	17	42	5	6	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0003	2416	34	3	4	25	1	1	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0004	2416	29	1	8	12	0	8	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0005	2414	16	0	6	10	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	1/0	t0006	2414	14	12	1	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0007	2415	12	11	1	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0008	2416	8	0	1	6	0	1	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0009	2415	6	0	2	4	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0010	2415	6	0	5	0	1	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0011	2414	5	5	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0012	2416	4	0	4	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0013	2416	3	0	0	3	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0014	2416	3	0	0	3	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0015	2415	3	0	2	0	1	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0016	2417	3	3	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0017	2414	2	2	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0018	2414	2	0	1	0	1	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0019	2414	2	2	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0020	2415	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221