JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHTKD1_chr10_12063954_12128221	0/0	t0021	798	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0022	2416	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0023	2415	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0024	2416	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0025	2416	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0026	2416	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0027	2415	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0028	2415	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0029	2415	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0030	2415	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0031	2415	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0032	2415	1	0	1	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0033	2414	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0034	2414	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0035	2414	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0036	2414	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0037	2414	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0038	2414	1	0	0	1	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0039	2414	1	1	0	0	0	0	copy fasta	DHTKD1	chr10	12063954	12128221
DHTKD1_chr10_12063954_12128221	0/0	t0040	2415	1	0	0	0	0	1	copy fasta	DHTKD1	chr10	12063954	12128221
DHX15_chr4_24522475_24589554	1/1	t0001	611	372	92	74	154	13	37	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	t0002	611	1	0	0	0	0	1	copy fasta	DHX15	chr4	24522475	24589554
DHX15_chr4_24522475_24589554	0/0	t0003	611	1	0	0	0	1	0	copy fasta	DHX15	chr4	24522475	24589554
DHX16_chr6_30648127_30678006	0/1	t0001	281	370	88	62	160	16	43	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	t0002	281	11	0	0	11	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	t0003	268	1	0	0	1	0	0	copy fasta	DHX16	chr6	30648127	30678006
DHX16_chr6_30648127_30678006	0/0	t0004	281	1	0	0	0	0	1	copy fasta	DHX16	chr6	30648127	30678006
DHX29_chr5_55251055_55312694	1/1	t0001	555	294	72	47	134	12	27	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	t0002	555	41	15	5	18	0	3	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	t0003	555	2	0	0	2	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	t0004	555	2	1	1	0	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX29_chr5_55251055_55312694	0/0	t0005	555	1	0	1	0	0	0	copy fasta	DHX29	chr5	55251055	55312694
DHX30_chr3_47798138_47855193	1/1	t0001	271	265	78	48	91	8	38	copy fasta	DHX30	chr3	47798138	47855193
DHX30_chr3_47798138_47855193	0/0	t0002	271	1	0	0	1	0	0	copy fasta	DHX30	chr3	47798138	47855193
DHX32_chr10_125831337_125886292	1/1	t0001	819	233	50	21	129	7	24	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	t0002	819	138	28	20	66	7	17	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	t0003	820	44	12	20	6	2	4	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	t0004	819	5	5	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	t0005	820	1	0	0	0	0	1	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	t0006	819	1	0	1	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	t0007	819	1	0	0	1	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX32_chr10_125831337_125886292	0/0	t0008	819	1	1	0	0	0	0	copy fasta	DHX32	chr10	125831337	125886292
DHX33_chr17_5435917_5473982	0/0	t0001	3402	96	1	16	66	4	9	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0002	3397	46	7	2	31	0	6	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	1/0	t0003	3412	34	5	17	2	3	6	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/1	t0004	3412	16	6	4	1	2	2	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0005	3399	14	0	0	14	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0006	3413	10	1	5	1	0	3	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0007	3399	9	5	2	1	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0008	3413	9	2	5	0	0	2	copy fasta	DHX33	chr17	5435917	5473982