JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHX33_chr17_5435917_5473982	0/0	t0009	3411	9	9	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0010	3398	6	0	0	4	0	2	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0011	3399	5	5	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0012	3403	4	0	1	2	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0013	3398	4	4	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0014	3412	4	4	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0015	3402	4	4	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0016	3402	4	0	0	4	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0017	3398	4	0	0	4	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0018	3396	4	0	0	4	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0019	3401	3	0	2	0	1	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0020	3412	3	3	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0021	3398	3	1	0	1	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0022	3413	3	1	1	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0023	3400	2	1	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0024	3402	2	2	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0025	3403	2	1	0	0	1	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0026	3400	2	0	0	1	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0027	3399	2	0	0	1	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0028	3399	2	2	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0029	3397	2	2	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0030	3401	2	1	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0031	3403	2	2	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0032	3414	2	1	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0033	3398	2	2	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0034	3413	2	2	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0035	3401	2	0	0	1	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0036	3400	2	0	0	1	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0037	3400	2	2	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0038	3398	2	2	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0039	3401	2	2	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0040	3399	2	0	1	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0041	3414	2	0	1	0	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0042	3402	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0043	3397	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0044	3400	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0045	3398	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0046	3403	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0047	3402	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0048	3401	1	0	0	0	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0049	3400	1	0	0	0	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0050	3408	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0051	3413	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0052	3403	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0053	3397	1	0	0	0	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0054	3398	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0055	3397	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0056	3398	1	0	0	0	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0057	3397	1	0	0	0	1	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0058	3412	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982