JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHX33_chr17_5435917_5473982	0/0	t0059	3413	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0060	3412	1	0	0	0	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0061	3399	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0062	3399	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0063	3399	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0064	3400	1	0	0	0	0	1	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0065	3398	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0066	3413	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0067	3399	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0068	3398	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0069	3397	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0070	3401	1	0	0	1	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0071	3401	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0072	3412	1	0	1	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0073	3412	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0074	3412	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX33_chr17_5435917_5473982	0/0	t0075	3413	1	1	0	0	0	0	copy fasta	DHX33	chr17	5435917	5473982
DHX34_chr19_47344315_47387704	1/1	t0001	907	185	21	45	83	8	26	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0002	907	124	37	24	47	3	13	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0003	910	29	12	6	6	2	3	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0004	907	19	0	0	19	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0005	908	4	2	2	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0006	905	3	3	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0007	907	2	0	0	2	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0008	907	2	2	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0009	907	2	0	0	0	0	2	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0010	910	2	0	0	2	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0011	907	1	1	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0012	907	1	1	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0013	907	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0014	907	1	1	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0015	908	1	0	1	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0016	910	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0017	905	1	1	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0018	907	1	1	0	0	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0019	907	1	0	0	0	1	0	copy fasta	DHX34	chr19	47344315	47387704
DHX34_chr19_47344315_47387704	0/0	t0020	907	1	0	0	1	0	0	copy fasta	DHX34	chr19	47344315	47387704
DHX35_chr20_38957344_39044721	1/0	t0001	1203	234	64	35	108	4	22	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/1	t0002	1203	46	7	11	19	2	6	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	t0003	1203	5	5	0	0	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	t0004	1203	2	0	0	2	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	t0005	1203	1	0	0	1	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	t0006	1203	1	0	0	1	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX35_chr20_38957344_39044721	0/0	t0007	1203	1	0	0	1	0	0	copy fasta	DHX35	chr20	38957344	39044721
DHX36_chr3_154267546_154329487	0/0	t0001	3698	144	31	19	81	4	9	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0002	3696	86	9	14	52	4	7	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/1	t0003	3696	65	5	16	30	3	10	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	1/0	t0004	3697	10	1	5	0	1	2	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0005	3696	9	9	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0006	3700	7	0	1	4	0	2	copy fasta	DHX36	chr3	154267546	154329487