JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHX36_chr3_154267546_154329487	0/0	t0007	3698	6	0	2	0	4	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0008	3698	4	4	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0009	3698	4	4	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0010	3700	4	2	2	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0011	3698	3	0	0	3	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0012	3698	2	2	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0013	3696	2	2	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0014	3696	2	0	0	2	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0015	3698	2	0	0	1	0	1	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0016	3702	2	2	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0017	3696	1	1	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0018	3698	1	0	0	1	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0019	3696	1	1	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0020	3696	1	0	0	1	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0021	3696	1	0	0	1	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0022	3696	1	1	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0023	3696	1	0	0	0	0	1	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0024	3698	1	0	0	1	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0025	3698	1	0	0	0	0	1	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0026	3698	1	0	1	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0027	3700	1	1	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0028	3702	1	0	0	1	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0029	3698	1	1	0	0	0	0	copy fasta	DHX36	chr3	154267546	154329487
DHX36_chr3_154267546_154329487	0/0	t0030	3696	1	0	0	0	0	1	copy fasta	DHX36	chr3	154267546	154329487
DHX37_chr12_124941826_124994131	1/1	t0001	1086	165	16	45	76	8	18	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0002	1086	105	21	24	40	7	13	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0003	1086	48	17	10	13	3	5	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0004	1086	13	13	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0005	1086	7	7	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0006	1086	6	6	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0007	1086	4	4	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0008	1086	3	3	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0009	1086	3	0	0	2	0	1	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0010	1086	2	0	0	0	0	2	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0011	1086	2	2	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0012	1086	1	0	0	1	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0013	1086	1	0	0	1	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0014	1086	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0015	1086	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0016	1086	1	0	0	0	0	1	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0017	1086	1	0	1	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0018	1086	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0019	1086	1	0	0	1	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0020	1086	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0021	1086	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0022	1086	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX37_chr12_124941826_124994131	0/0	t0023	1086	1	1	0	0	0	0	copy fasta	DHX37	chr12	124941826	124994131
DHX38_chr16_72088847_72117912	0/1	t0001	640	165	65	14	61	4	20	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	1/0	t0002	640	158	11	51	77	7	11	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	t0003	640	45	2	9	18	5	11	copy fasta	DHX38	chr16	72088847	72117912