JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHX38_chr16_72088847_72117912	0/0	t0004	640	5	0	4	0	0	1	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	t0005	640	3	1	2	0	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	t0006	640	1	1	0	0	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	t0007	640	1	0	0	0	0	1	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	t0008	640	1	1	0	0	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX38_chr16_72088847_72117912	0/0	t0009	640	1	1	0	0	0	0	copy fasta	DHX38	chr16	72088847	72117912
DHX40_chr17_59560610_59613345	1/1	t0001	1236	313	77	46	139	12	37	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	t0002	1236	5	5	0	0	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	t0003	1238	3	0	0	1	2	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	t0004	1236	1	1	0	0	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	t0005	1236	1	0	0	0	0	1	copy fasta	DHX40	chr17	59560610	59613345
DHX40_chr17_59560610_59613345	0/0	t0006	1236	1	1	0	0	0	0	copy fasta	DHX40	chr17	59560610	59613345
DHX57_chr2_38792729_38880934	0/0	t0001	726	123	21	26	55	4	17	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/1	t0002	724	91	21	25	27	3	14	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	1/0	t0003	725	55	40	5	9	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	t0004	726	6	0	3	0	1	2	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	t0005	725	3	1	0	1	0	1	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	t0006	727	2	0	0	2	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	t0007	725	2	1	1	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	t0008	726	1	1	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX57_chr2_38792729_38880934	0/0	t0009	726	1	1	0	0	0	0	copy fasta	DHX57	chr2	38792729	38880934
DHX58_chr17_42096411_42117714	1/1	t0001	554	224	13	50	121	8	30	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	t0002	554	120	78	16	17	5	4	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	t0003	554	5	5	0	0	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	t0004	554	2	1	0	0	1	0	copy fasta	DHX58	chr17	42096411	42117714
DHX58_chr17_42096411_42117714	0/0	t0005	554	1	1	0	0	0	0	copy fasta	DHX58	chr17	42096411	42117714
DHX8_chr17_43478975_43530670	1/1	t0001	1887	107	8	26	47	5	19	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0002	1887	100	19	17	49	4	11	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0003	1887	96	20	16	46	4	10	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0004	1887	11	11	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0005	1888	7	0	2	4	0	1	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0006	1887	6	6	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0007	1888	6	0	0	4	1	1	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0008	1887	5	5	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0009	1888	3	0	1	2	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0010	1887	2	2	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0011	1887	2	0	0	0	0	2	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0012	1887	1	1	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0013	1887	1	1	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0014	1887	1	1	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0015	1887	1	0	1	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0016	1887	1	1	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0017	1888	1	1	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0018	1887	1	0	1	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0019	1888	1	1	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX8_chr17_43478975_43530670	0/0	t0020	1887	1	1	0	0	0	0	copy fasta	DHX8	chr17	43478975	43530670
DHX9_chr1_182834347_182892982	1/1	t0001	681	269	81	60	94	8	24	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	t0002	681	4	4	0	0	0	0	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	t0003	681	2	2	0	0	0	0	copy fasta	DHX9	chr1	182834347	182892982
DHX9_chr1_182834347_182892982	0/0	t0004	681	1	1	0	0	0	0	copy fasta	DHX9	chr1	182834347	182892982