JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIABLO_chr12_122202668_122231052	0/0	t0001	752	197	27	32	108	9	21	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	1/1	t0002	752	104	4	33	46	4	15	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	t0003	752	51	39	2	8	0	2	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	t0004	752	11	11	0	0	0	0	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	t0005	753	5	0	2	0	0	3	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	t0006	753	3	2	1	0	0	0	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	t0007	752	2	0	0	2	0	0	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	t0008	753	2	0	1	0	1	0	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	t0009	752	2	2	0	0	0	0	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	t0010	752	1	1	0	0	0	0	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	t0011	753	1	0	1	0	0	0	copy fasta	DIABLO	chr12	122202668	122231052
DIABLO_chr12_122202668_122231052	0/0	t0012	752	1	0	0	0	0	1	copy fasta	DIABLO	chr12	122202668	122231052
DIAPH1_chr5_141510021_141624000	1/0	t0001	1917	252	31	52	130	10	28	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/1	t0002	1917	22	12	6	0	2	1	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0003	1917	22	20	2	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0004	1917	9	0	1	0	1	7	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0005	1917	6	6	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0006	1917	5	5	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0007	1917	5	0	4	0	0	1	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0008	1917	3	3	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0009	1917	2	0	0	0	0	2	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0010	1917	2	1	1	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0011	1917	2	0	0	0	2	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0012	1917	2	2	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0013	1917	1	1	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0014	1917	1	0	0	0	1	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0015	1917	1	1	0	0	0	0	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH1_chr5_141510021_141624000	0/0	t0016	1917	1	0	0	0	0	1	copy fasta	DIAPH1	chr5	141510021	141624000
DIAPH2_chrX_96679842_97609997	0/0	t0001	5904	60	12	8	29	0	11	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0002	5901	47	2	13	26	4	2	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0003	5908	7	7	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0004	5904	4	4	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0005	5901	4	0	2	1	0	1	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0006	5904	2	1	1	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0007	5905	2	0	0	2	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0008	5904	2	0	0	2	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0009	5905	2	0	1	0	0	1	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0010	5901	2	0	0	2	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0011	5898	2	2	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0012	5901	2	2	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0013	5900	1	1	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0014	5904	1	0	0	0	1	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0015	5902	1	1	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0016	5907	1	0	0	0	0	1	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0017	5904	1	0	1	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0018	5899	1	0	1	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0019	5901	1	0	0	1	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0020	5901	1	1	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0021	5899	1	1	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH2_chrX_96679842_97609997	0/0	t0022	5903	1	1	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997