Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AEN_chr15_88616340_88637281	0/0	t0013	2085	5	4	1	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0014	2095	4	4	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0015	2095	3	3	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0016	2095	3	0	0	3	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0017	2095	3	3	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0018	2095	3	0	0	3	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0019	2095	3	0	0	3	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0020	2095	3	0	0	3	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0021	2095	3	3	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0022	2095	2	0	0	0	0	2	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0023	2095	2	2	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0024	2094	2	0	1	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0025	2095	2	0	0	2	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0026	2095	2	2	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0027	2095	2	0	2	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0028	2095	2	0	0	1	0	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0029	2095	2	1	0	0	0	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0030	2095	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0031	2095	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0032	2095	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0033	2095	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0034	2095	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0035	2095	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0036	2094	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0037	2095	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0038	2095	1	0	0	0	0	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0039	2095	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0040	2095	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0041	2095	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0042	2095	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0043	2094	1	0	0	1	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0044	2095	1	0	0	0	0	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0045	2095	1	0	0	0	0	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0046	2095	1	1	0	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AFAP1L1_chr5_149266859_149348637	1/1	t0001	3718	121	18	31	53	2	15	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0002	3717	78	21	15	21	7	14	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0003	3717	19	10	3	6	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0004	3715	16	0	3	10	1	2	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0005	3717	8	8	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0006	3716	7	5	2	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0007	3717	5	4	1	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0008	3717	4	3	1	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0009	3717	3	0	0	3	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0010	3718	3	3	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0011	3717	3	0	0	3	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0012	3717	2	2	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0013	3718	2	0	0	1	0	1	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0014	3715	2	0	2	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0015	3718	1	0	0	0	0	1	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0016	3718	1	0	0	1	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637