JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIAPH2_chrX_96679842_97609997	0/0	t0023	5910	1	1	0	0	0	0	copy fasta	DIAPH2	chrX	96679842	97609997
DIAPH3_chr13_59660583_60168928	1/0	t0001	1164	87	25	19	27	2	13	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	t0002	1165	71	16	17	23	4	11	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/1	t0003	1161	13	9	1	2	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	t0004	1160	12	1	0	8	0	3	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	t0005	1164	11	3	3	2	0	3	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	t0006	1166	4	1	0	1	0	2	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	t0007	1166	4	4	0	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	t0008	1162	2	1	0	1	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	t0009	1165	2	0	0	2	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	t0010	1160	1	1	0	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DIAPH3_chr13_59660583_60168928	0/0	t0011	1166	1	1	0	0	0	0	copy fasta	DIAPH3	chr13	59660583	60168928
DICER1_chr14_95081228_95162529	0/1	t0001	4616	72	10	9	37	0	15	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0002	4615	64	0	13	48	2	1	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0003	4616	25	1	9	12	1	2	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0004	4615	20	4	4	10	1	1	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0005	4616	19	19	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0006	4616	18	4	4	5	4	1	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0007	4614	17	15	2	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0008	4617	16	13	3	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0009	4616	5	5	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0010	4616	5	4	1	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0011	4615	4	3	1	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0012	4616	3	3	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	1/0	t0013	4616	3	0	1	0	1	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0014	4615	3	0	0	3	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0015	4616	3	3	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0016	4615	2	2	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0017	4616	2	0	0	0	0	2	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0018	4617	2	0	0	1	0	1	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0019	4616	2	0	2	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0020	4616	2	0	0	2	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0021	4615	2	2	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0022	4615	2	2	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0023	4615	2	0	2	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0024	4617	1	1	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0025	4617	1	0	0	0	0	1	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0026	4613	1	0	1	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0027	4615	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0028	4616	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0029	4616	1	0	0	0	1	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0030	4615	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0031	4616	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0032	4615	1	1	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0033	4616	1	1	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0034	4617	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0035	4616	1	1	0	0	0	0	copy fasta	DICER1	chr14	95081228	95162529
DICER1_chr14_95081228_95162529	0/0	t0036	4615	1	0	0	1	0	0	copy fasta	DICER1	chr14	95081228	95162529
DIDO1_chr20_62872743_62931505	1/1	t0001	1757	271	59	50	124	9	27	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0002	1757	16	12	4	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505