JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIDO1_chr20_62872743_62931505	0/0	t0003	1757	7	7	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0004	1757	5	4	1	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0005	1757	4	4	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0006	1757	4	0	2	0	1	1	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0007	1757	3	3	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0008	1757	2	0	1	0	1	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0009	1757	1	0	0	0	1	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0010	1757	1	0	0	1	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0011	1757	1	0	0	1	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0012	1757	1	0	0	1	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0013	1757	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0014	1757	1	0	0	1	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0015	1757	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIDO1_chr20_62872743_62931505	0/0	t0016	1757	1	1	0	0	0	0	copy fasta	DIDO1	chr20	62872743	62931505
DIMT1_chr5_62382254_62408905	1/0	t0001	1890	155	28	28	65	7	26	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/1	t0002	1887	115	37	10	56	1	10	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	t0003	1887	88	11	15	54	4	4	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	t0004	1887	28	0	5	20	3	0	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	t0005	1887	4	4	0	0	0	0	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	t0006	1890	4	4	0	0	0	0	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	t0007	1887	3	0	3	0	0	0	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	t0008	1887	2	0	0	2	0	0	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	t0009	1887	1	0	0	1	0	0	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	t0010	1887	1	1	0	0	0	0	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	t0011	1890	1	1	0	0	0	0	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	t0012	1918	1	0	1	0	0	0	copy fasta	DIMT1	chr5	62382254	62408905
DIMT1_chr5_62382254_62408905	0/0	t0013	1887	1	0	0	0	1	0	copy fasta	DIMT1	chr5	62382254	62408905
DIO1_chr1_53889187_53916086	1/0	t0001	1112	267	36	32	167	8	23	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/1	t0002	1112	114	11	36	33	8	25	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	t0003	1112	36	27	6	0	2	1	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	t0004	1112	11	9	1	1	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	t0005	1112	8	7	1	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	t0006	1112	6	5	1	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	t0007	1112	4	4	0	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	t0008	1112	1	1	0	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	t0009	1112	1	0	0	1	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	t0010	1112	1	0	1	0	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	t0011	1112	1	0	0	1	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	t0012	1112	1	0	0	1	0	0	copy fasta	DIO1	chr1	53889187	53916086
DIO1_chr1_53889187_53916086	0/0	t0013	1112	1	0	0	0	0	1	copy fasta	DIO1	chr1	53889187	53916086
DIO2_chr14_80192526_80216504	0/0	t0001	5197	107	16	26	42	6	17	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	1/0	t0002	5196	87	8	21	38	5	14	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0003	5196	82	12	8	60	0	2	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0004	5198	19	3	1	13	0	2	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0005	5196	15	12	1	0	0	2	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0006	5197	10	1	2	5	2	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0007	5196	7	7	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0008	5196	5	0	0	5	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0009	5195	5	5	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0010	5197	4	1	1	2	0	0	copy fasta	DIO2	chr14	80192526	80216504