JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIO2_chr14_80192526_80216504	0/0	t0011	5195	4	4	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0012	5196	3	0	0	0	0	3	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0013	5197	3	0	0	3	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0014	5196	3	0	3	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/1	t0015	5195	3	0	2	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0016	5195	2	0	0	2	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0017	5196	2	0	0	0	2	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0018	5197	2	0	2	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0019	5196	2	0	0	2	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0020	5196	2	2	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0021	5197	2	2	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0022	5197	2	0	0	0	0	2	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0023	5195	2	2	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0024	5197	2	2	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0025	5196	2	1	0	1	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0026	5197	2	0	0	2	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0027	5196	2	2	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0028	5195	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0029	5196	1	0	1	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0030	5196	1	0	0	1	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0031	5196	1	0	0	1	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0032	5196	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0033	5196	1	0	0	1	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0034	5197	1	0	0	1	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0035	5196	1	0	0	1	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0036	5196	1	0	0	0	1	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0037	5195	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0038	5196	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0039	5196	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0040	5195	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0041	5197	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0042	5197	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0043	5197	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0044	5198	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0045	5197	1	0	0	1	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0046	5197	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0047	5197	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0048	5196	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0049	5197	1	0	0	1	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0050	5196	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0051	5196	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO2_chr14_80192526_80216504	0/0	t0052	5196	1	1	0	0	0	0	copy fasta	DIO2	chr14	80192526	80216504
DIO3_chr14_101556495_101568452	1/1	t0001	1044	320	51	58	157	12	40	copy fasta	DIO3	chr14	101556495	101568452
DIO3_chr14_101556495_101568452	0/0	t0002	1044	63	47	9	1	0	6	copy fasta	DIO3	chr14	101556495	101568452
DIO3_chr14_101556495_101568452	0/0	t0003	1044	1	1	0	0	0	0	copy fasta	DIO3	chr14	101556495	101568452
DIO3_chr14_101556495_101568452	0/0	t0004	1044	1	1	0	0	0	0	copy fasta	DIO3	chr14	101556495	101568452
DIO3_chr14_101556495_101568452	0/0	t0005	1044	1	0	1	0	0	0	copy fasta	DIO3	chr14	101556495	101568452
DIP2A_chr21_46453891_46575015	1/0	t0001	2635	106	16	24	45	1	19	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0002	2634	86	5	17	49	7	8	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0003	2635	73	3	8	54	1	7	copy fasta	DIP2A	chr21	46453891	46575015