JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIP2A_chr21_46453891_46575015	0/0	t0004	2637	19	14	3	0	0	2	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/1	t0005	2633	13	1	5	5	1	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0006	2633	12	11	1	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0007	2636	9	7	0	2	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0008	2637	8	8	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0009	2635	5	0	1	0	2	2	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0010	2634	4	1	1	0	0	2	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0011	2636	4	2	2	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0012	2634	4	4	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0013	2636	4	2	1	0	0	1	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0014	2636	3	2	1	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0015	2633	3	3	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0016	2634	2	2	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0017	2637	2	2	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0018	2635	2	0	0	2	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0019	2634	2	0	2	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0020	2634	2	1	1	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0021	2636	2	2	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0022	2636	1	1	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0023	2634	1	1	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0024	2635	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0025	2634	1	0	1	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0026	2635	1	1	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0027	2635	1	1	0	0	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0028	2634	1	0	0	0	0	1	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0029	2635	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2A_chr21_46453891_46575015	0/0	t0030	2634	1	0	0	1	0	0	copy fasta	DIP2A	chr21	46453891	46575015
DIP2B_chr12_50499985_50753657	0/0	t0001	3975	67	5	21	31	1	9	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	1/0	t0002	3975	53	4	11	35	0	2	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/1	t0003	3975	45	5	12	15	4	8	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0004	3975	34	14	1	16	1	2	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0005	3975	12	11	1	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0006	3981	9	8	0	0	1	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0007	3975	6	6	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0008	3975	5	5	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0009	3975	4	4	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0010	3999	3	2	1	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0011	3996	3	0	1	0	2	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0012	3993	3	1	1	0	1	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0013	3978	3	0	3	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0014	3975	3	0	0	3	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0015	4005	2	0	1	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0016	4002	2	0	1	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0017	3975	2	2	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0018	3975	2	0	0	0	0	2	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0019	4071	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0020	4065	1	0	0	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0021	4047	1	0	1	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0022	4032	1	0	1	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0023	4020	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657