JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIP2B_chr12_50499985_50753657	0/0	t0024	4017	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0025	4014	1	0	1	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0026	4011	1	0	0	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0027	3999	1	0	0	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0028	4002	1	0	0	1	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0029	3987	1	0	0	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0030	3987	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0031	3975	1	0	0	1	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0032	3975	1	0	0	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0033	3975	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0034	3975	1	0	0	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0035	3975	1	0	1	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0036	3975	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0037	3975	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0038	3975	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0039	3975	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0040	3975	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0041	3975	1	0	0	1	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0042	3975	1	0	0	1	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0043	3975	1	0	0	0	0	1	copy fasta	DIP2B	chr12	50499985	50753657
DIP2B_chr12_50499985_50753657	0/0	t0044	3975	1	1	0	0	0	0	copy fasta	DIP2B	chr12	50499985	50753657
DIP2C_chr10_269201_694668	0/0	t0001	3216	31	6	10	12	1	2	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	t0002	3214	28	9	5	12	1	1	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	t0003	3215	22	7	4	7	2	2	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	t0004	3215	1	0	0	1	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	t0005	3216	1	0	0	1	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	t0006	3215	1	1	0	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	t0007	3215	1	0	1	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	t0008	3215	1	0	0	0	0	1	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	t0009	3214	1	1	0	0	0	0	copy fasta	DIP2C	chr10	269201	694668
DIP2C_chr10_269201_694668	0/0	t0010	3216	1	0	0	1	0	0	copy fasta	DIP2C	chr10	269201	694668
DIPK1A_chr1_92837167_92966462	0/1	t0001	1251	104	36	17	31	7	12	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	t0002	1251	47	18	12	5	5	7	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	t0003	1250	22	14	4	3	0	1	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	t0004	1250	14	12	0	0	0	2	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	1/0	t0005	1250	4	0	1	0	2	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	t0006	1250	4	0	0	4	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	t0007	1250	2	2	0	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	t0008	1247	2	0	2	0	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1A_chr1_92837167_92966462	0/0	t0009	1251	1	0	0	1	0	0	copy fasta	DIPK1A	chr1	92837167	92966462
DIPK1B_chr9_136707572_136729742	1/0	t0001	1063	293	62	47	139	10	34	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/1	t0002	1063	89	21	23	33	5	6	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	t0003	1063	27	6	13	0	1	7	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	t0004	1063	3	3	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	t0005	1063	3	0	0	3	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	t0006	1063	1	0	1	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	t0007	1063	1	0	0	1	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	t0008	1063	1	0	0	1	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	t0009	1063	1	0	0	1	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	t0010	1063	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742