JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIPK1B_chr9_136707572_136729742	0/0	t0011	1063	1	0	0	0	0	1	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1B_chr9_136707572_136729742	0/0	t0012	1063	1	1	0	0	0	0	copy fasta	DIPK1B	chr9	136707572	136729742
DIPK1C_chr18_74429775_74462308	0/1	t0001	1776	170	3	28	119	3	16	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0002	1776	113	9	29	53	9	13	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0003	1776	79	13	14	44	1	7	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0004	1776	37	20	6	3	4	4	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0005	1776	13	12	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0006	1776	11	9	1	0	1	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0007	1776	7	5	2	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0008	1776	7	0	0	7	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0009	1776	7	4	1	0	0	2	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0010	1774	6	6	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	1/0	t0011	1776	5	4	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0012	1776	2	2	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0013	1776	2	2	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0014	1774	2	1	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0015	1776	2	1	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0016	1776	2	0	0	0	0	2	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0017	1776	2	2	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0018	1776	1	0	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0019	1776	1	0	0	0	0	1	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0020	1776	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0021	1776	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0022	1776	1	0	0	0	0	1	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0023	1776	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0024	1776	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0025	1776	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0026	1776	1	0	0	0	0	1	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0027	1776	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0028	1776	1	0	0	1	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0029	1776	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0030	1776	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0031	1776	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0032	1776	1	0	1	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0033	1776	1	0	0	0	0	1	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK1C_chr18_74429775_74462308	0/0	t0034	1776	1	1	0	0	0	0	copy fasta	DIPK1C	chr18	74429775	74462308
DIPK2A_chr3_143966823_143997368	1/1	t0001	3038	129	5	38	68	5	11	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0002	3053	117	32	14	52	5	14	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0003	3053	52	10	5	31	1	5	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0004	3053	17	1	3	13	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0005	3052	12	10	0	2	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0006	3053	12	12	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0007	3052	11	1	4	1	0	5	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0008	3053	11	0	0	11	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0009	3053	9	9	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0010	3053	5	0	0	0	2	3	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0011	3053	4	4	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0012	3039	4	0	0	3	1	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0013	3053	3	0	1	0	2	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0014	3038	3	2	1	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368