JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIPK2A_chr3_143966823_143997368	0/0	t0015	3053	2	2	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0016	3038	2	0	0	0	0	2	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0017	3053	2	2	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0018	3037	2	0	1	1	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0019	3053	2	2	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0020	3038	1	0	0	1	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0021	3053	1	1	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0022	3053	1	0	0	1	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0023	3052	1	0	0	1	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0024	3053	1	0	1	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0025	3054	1	0	1	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0026	3054	1	1	0	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0027	3053	1	0	0	1	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2A_chr3_143966823_143997368	0/0	t0028	3053	1	0	1	0	0	0	copy fasta	DIPK2A	chr3	143966823	143997368
DIPK2B_chrX_45143373_45205876	1/1	t0001	3330	67	8	20	21	8	8	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0002	3330	66	15	1	45	0	5	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0003	3330	48	3	11	24	1	9	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0004	3330	21	8	7	0	3	3	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0005	3330	19	12	3	2	0	2	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0006	3330	15	0	0	15	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0007	3330	11	0	0	11	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0008	3330	10	0	8	2	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0009	3330	10	9	1	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0010	3330	5	0	0	4	0	1	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0011	3330	3	1	1	0	1	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0012	3330	3	0	0	3	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0013	3327	3	1	2	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0014	3330	3	3	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0015	3330	3	1	0	0	0	2	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0016	3330	2	2	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0017	3330	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0018	3330	1	0	0	0	0	1	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0019	3328	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0020	3330	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0021	3330	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0022	3330	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0023	3330	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0024	3330	1	0	1	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0025	3329	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0026	3332	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0027	3330	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0028	3332	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0029	3346	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0030	3330	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0031	3330	1	0	0	1	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0032	3331	1	0	0	0	0	1	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0033	3330	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIPK2B_chrX_45143373_45205876	0/0	t0034	3330	1	1	0	0	0	0	copy fasta	DIPK2B	chrX	45143373	45205876
DIRAS1_chr19_2709567_2726372	0/0	t0001	2784	128	8	16	93	2	9	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	1/0	t0002	2782	99	3	30	44	8	13	copy fasta	DIRAS1	chr19	2709567	2726372