JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIRAS1_chr19_2709567_2726372	0/0	t0003	2782	45	14	14	1	6	10	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0004	2782	17	17	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0005	2785	16	2	2	9	1	2	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0006	2783	16	0	6	6	0	4	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/1	t0007	2783	8	0	4	1	0	2	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0008	2785	8	8	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0009	2784	6	5	1	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0010	2783	5	5	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0011	2783	4	0	1	0	0	3	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0012	2780	3	2	1	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0013	2782	3	2	1	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0014	2778	3	2	1	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0015	2784	3	2	0	0	0	1	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0016	2775	3	2	1	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0017	2775	2	2	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0018	2779	2	2	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0019	2781	2	2	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0020	2784	2	0	0	2	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0021	2783	2	0	0	2	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0022	2782	2	0	0	2	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0023	2773	2	2	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0024	2782	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0025	2775	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0026	2783	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0027	2783	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0028	2783	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0029	2783	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0030	2782	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0031	2782	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0032	2784	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0033	2782	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0034	2785	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0035	2785	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0036	2785	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0037	2784	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0038	2784	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0039	2781	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0040	2784	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0041	2784	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0042	2784	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0043	2784	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0044	2784	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0045	2784	1	0	0	0	0	1	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0046	2786	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0047	2784	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0048	2784	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0049	2782	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0050	2782	1	0	0	1	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0051	2782	1	0	0	0	1	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0052	2782	1	0	0	0	0	1	copy fasta	DIRAS1	chr19	2709567	2726372