JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIRAS1_chr19_2709567_2726372	0/0	t0053	2782	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS1_chr19_2709567_2726372	0/0	t0054	2784	1	1	0	0	0	0	copy fasta	DIRAS1	chr19	2709567	2726372
DIRAS2_chr9_90604832_90647824	0/0	t0001	3507	126	11	30	67	4	14	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0002	3506	70	9	11	35	3	12	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0003	3507	69	18	8	38	2	3	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0004	3507	58	22	11	24	0	1	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	1/0	t0005	3506	41	19	15	3	1	2	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/1	t0006	3507	28	0	0	24	0	3	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0007	3506	8	7	1	0	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0008	3507	7	2	2	0	0	3	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0009	3507	5	0	0	5	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0010	3507	3	0	0	3	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0011	3507	3	0	0	3	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0012	3507	3	0	0	3	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0013	3507	3	0	0	3	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0014	3506	3	3	0	0	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0015	3506	2	0	0	2	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0016	3507	1	0	1	0	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0017	3507	1	0	0	0	0	1	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0018	3506	1	0	0	1	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0019	3507	1	0	0	1	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0020	3507	1	0	0	1	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0021	3506	1	0	0	0	0	1	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0022	3506	1	0	0	1	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0023	3506	1	1	0	0	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0024	3506	1	0	0	1	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0025	3506	1	0	0	1	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS2_chr9_90604832_90647824	0/0	t0026	3506	1	0	1	0	0	0	copy fasta	DIRAS2	chr9	90604832	90647824
DIRAS3_chr1_68040962_68055627	1/1	t0001	792	343	65	68	154	14	40	copy fasta	DIRAS3	chr1	68040962	68055627
DIRAS3_chr1_68040962_68055627	0/0	t0002	792	28	24	3	0	0	1	copy fasta	DIRAS3	chr1	68040962	68055627
DIRAS3_chr1_68040962_68055627	0/0	t0003	792	3	2	1	0	0	0	copy fasta	DIRAS3	chr1	68040962	68055627
DIRAS3_chr1_68040962_68055627	0/0	t0004	792	1	0	0	0	0	1	copy fasta	DIRAS3	chr1	68040962	68055627
DIRAS3_chr1_68040962_68055627	0/0	t0005	792	1	1	0	0	0	0	copy fasta	DIRAS3	chr1	68040962	68055627
DIS3L2_chr2_231956713_232342192	1/1	t0001	709	266	73	48	101	10	32	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	t0002	709	14	10	4	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	t0003	708	6	0	3	1	0	2	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	t0004	708	3	3	0	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	t0005	709	3	3	0	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	t0006	709	3	0	0	3	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	t0007	709	2	2	0	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	t0008	709	2	0	2	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	t0009	709	2	2	0	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	t0010	709	1	0	1	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	t0011	709	1	1	0	0	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L2_chr2_231956713_232342192	0/0	t0012	709	1	0	0	1	0	0	copy fasta	DIS3L2	chr2	231956713	232342192
DIS3L_chr15_66288568_66338898	1/0	t0001	616	90	22	19	34	1	13	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0002	607	61	9	16	27	2	7	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0003	612	50	6	3	34	3	4	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0004	614	45	3	11	19	4	8	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0005	615	36	33	2	1	0	0	copy fasta	DIS3L	chr15	66288568	66338898