JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIS3L_chr15_66288568_66338898	0/0	t0006	614	31	0	8	23	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0007	607	24	0	2	21	0	1	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0008	613	18	1	4	13	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0009	617	10	1	3	0	3	3	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0010	616	9	9	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0011	615	5	3	0	2	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0012	607	4	0	2	0	0	2	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0013	616	3	0	0	3	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0014	615	2	2	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0015	614	2	0	1	0	0	1	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0016	613	2	0	0	0	1	1	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0017	615	1	0	1	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0018	613	1	0	0	1	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0019	616	1	1	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0020	617	1	1	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0021	617	1	1	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0022	613	1	0	0	1	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/1	t0023	615	1	0	0	0	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3L_chr15_66288568_66338898	0/0	t0024	606	1	0	0	1	0	0	copy fasta	DIS3L	chr15	66288568	66338898
DIS3_chr13_72747169_72786900	0/0	t0001	7696	65	8	12	37	3	5	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0002	7716	61	3	14	32	1	11	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0003	7717	46	5	1	38	1	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0004	7716	45	0	7	29	2	7	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0005	7716	28	20	3	4	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0006	7718	24	5	6	2	1	10	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/1	t0007	7718	10	0	5	0	3	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0008	7719	9	6	2	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0009	7718	8	0	1	7	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0010	7716	6	0	1	5	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0011	7696	6	0	5	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0012	7697	5	0	0	4	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0013	7717	5	0	0	5	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0014	7716	4	4	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0015	7694	4	0	0	2	0	2	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0016	7695	4	4	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0017	7717	3	0	1	0	0	2	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0018	7719	3	3	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0019	7718	3	3	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0020	7717	3	0	0	1	0	2	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0021	7717	2	2	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0022	7717	2	2	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0023	7719	2	2	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0024	7718	2	0	0	2	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0025	7717	2	0	0	2	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0026	7716	2	0	0	1	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0027	7717	2	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0028	7720	2	0	2	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0029	7711	2	2	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0030	7719	2	0	2	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0031	7716	1	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900