Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AFAP1L1_chr5_149266859_149348637	0/0	t0017	3717	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0018	3717	1	0	0	0	0	1	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0019	3717	1	0	1	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0020	3717	1	0	1	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0021	3717	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0022	3717	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0023	3718	1	0	0	1	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0024	3718	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0025	3717	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0026	3718	1	0	0	1	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L1_chr5_149266859_149348637	0/0	t0027	3716	1	1	0	0	0	0	copy fasta	AFAP1L1	chr5	149266859	149348637
AFAP1L2_chr10_114289824_114409502	0/1	t0001	1264	105	17	22	37	8	20	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0002	1259	44	3	5	27	0	9	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	1/0	t0003	1266	34	17	7	5	1	3	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0004	1263	14	2	6	5	1	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0005	1265	12	11	0	1	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0006	1268	12	6	3	0	0	3	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0007	1269	9	9	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0008	1265	6	2	0	3	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0009	1250	6	6	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0010	1263	4	4	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0011	1260	4	0	0	4	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0012	1250	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0013	1263	1	0	1	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0014	1262	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0015	1267	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0016	1264	1	0	0	1	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0017	1264	1	0	0	1	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0018	1265	1	0	0	0	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0019	1270	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0020	1267	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0021	1270	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0022	1272	1	1	0	0	0	0	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1L2_chr10_114289824_114409502	0/0	t0023	1264	1	0	0	0	0	1	copy fasta	AFAP1L2	chr10	114289824	114409502
AFAP1_chr4_7753714_7944861	0/0	t0001	5261	46	1	6	33	0	6	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0002	5260	37	3	9	15	1	9	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0003	5260	31	0	5	20	2	4	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0004	5260	25	12	10	1	1	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0005	5260	24	1	4	15	2	2	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	1/1	t0006	5260	23	9	1	9	0	2	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0007	5260	7	6	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0008	5260	7	0	0	4	0	3	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0009	5265	5	5	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0010	5261	5	0	5	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0011	5260	5	0	4	0	1	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0012	5261	4	4	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0013	5261	4	4	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0014	5261	4	0	0	4	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0015	5260	4	0	3	0	1	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0016	5260	4	0	0	4	0	0	copy fasta	AFAP1	chr4	7753714	7944861