JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
DIS3_chr13_72747169_72786900	0/0	t0032	7717	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0033	7717	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0034	7716	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0035	7717	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0036	7716	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0037	7718	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0038	7718	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0039	7720	1	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0040	7719	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0041	7717	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0042	7717	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0043	7718	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0044	7717	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0045	7717	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0046	7718	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0047	7718	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0048	7716	1	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0049	7712	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0050	7717	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0051	7717	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0052	7716	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0053	7715	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0054	7716	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0055	7719	1	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0056	7719	1	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0057	7716	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0058	7718	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0059	7718	1	0	0	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0060	7695	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0061	7717	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0062	7717	1	0	0	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0063	7718	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0064	7718	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0065	7717	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0066	7716	1	0	0	0	1	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0067	7716	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0068	7696	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0069	7696	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0070	7696	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0071	7696	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0072	7696	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0073	7695	1	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0074	7697	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0075	7696	1	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0076	7696	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0077	7696	1	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0078	7695	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0079	7694	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0080	7693	1	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	1/0	t0081	7695	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900