JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIS3_chr13_72747169_72786900	0/0	t0082	7716	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0083	7717	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0084	7716	1	0	0	0	1	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0085	7716	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0086	7717	1	0	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0087	7716	1	0	0	1	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0088	7697	1	0	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0089	7718	1	1	0	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DIS3_chr13_72747169_72786900	0/0	t0090	7716	1	0	1	0	0	0	copy fasta	DIS3	chr13	72747169	72786900
DISC1_chr1_231621790_232046272	1/0	t0001	4520	6	2	2	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0002	4519	5	0	0	3	0	2	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0003	4520	4	0	1	3	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0004	4516	4	0	1	2	0	1	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0005	4518	3	1	1	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0006	4524	2	2	0	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/1	t0007	4520	2	0	1	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0008	4502	2	0	1	0	0	1	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0009	4516	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0010	4518	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0011	4524	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0012	4516	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0013	4524	1	1	0	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0014	4520	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0015	4520	1	0	0	1	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0016	4524	1	0	1	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0017	4524	1	1	0	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0018	4524	1	1	0	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0019	4524	1	1	0	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISC1_chr1_231621790_232046272	0/0	t0020	4524	1	1	0	0	0	0	copy fasta	DISC1	chr1	231621790	232046272
DISP1_chr1_222810039_223010995	1/1	t0001	222	345	89	74	134	12	34	copy fasta	DISP1	chr1	222810039	223010995
DISP1_chr1_222810039_223010995	0/0	t0002	222	3	3	0	0	0	0	copy fasta	DISP1	chr1	222810039	223010995
DISP2_chr15_40353219_40383621	1/0	t0001	8407	32	3	8	11	4	5	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0002	8739	28	0	1	23	0	4	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0003	8739	16	1	9	4	1	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0004	8410	15	4	0	10	0	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0005	8410	14	0	3	8	0	3	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0006	8414	10	0	8	0	0	2	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0007	8435	10	9	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0008	8412	9	1	6	0	1	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0009	8407	7	7	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0010	8740	7	0	0	7	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/1	t0011	8740	7	0	2	2	0	2	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0012	8410	6	0	0	5	0	1	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0013	8739	6	0	0	6	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0014	8407	5	4	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0015	8397	4	4	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0016	8414	4	4	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0017	8412	4	0	0	4	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0018	8739	4	0	0	4	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0019	8435	4	3	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621