JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DISP2_chr15_40353219_40383621	0/0	t0170	8436	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0171	8434	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0172	8441	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0173	8439	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0174	8447	1	0	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0175	8410	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0176	8388	1	1	0	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0177	8413	1	0	0	1	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0178	8411	1	0	0	0	1	0	copy fasta	DISP2	chr15	40353219	40383621
DISP2_chr15_40353219_40383621	0/0	t0179	8413	1	0	1	0	0	0	copy fasta	DISP2	chr15	40353219	40383621
DISP3_chr1_11474155_11542551	1/1	t0001	1087	100	5	32	42	6	13	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0002	1087	79	5	9	56	1	8	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0003	1088	66	3	5	49	2	7	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0004	1087	46	31	5	6	1	3	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0005	1087	13	13	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0006	1087	12	1	0	6	0	5	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0007	1085	7	7	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0008	1087	6	5	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0009	1087	4	3	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0010	1087	3	3	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0011	1087	3	0	0	2	0	1	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0012	1087	2	2	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0013	1087	2	0	0	2	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0014	1087	2	2	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0015	1087	2	2	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0016	1087	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0017	1087	1	0	1	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0018	1087	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0019	1087	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0020	1087	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0021	1087	1	1	0	0	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0022	1087	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0023	1087	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0024	1087	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0025	1088	1	0	0	0	0	1	copy fasta	DISP3	chr1	11474155	11542551
DISP3_chr1_11474155_11542551	0/0	t0026	1087	1	0	0	1	0	0	copy fasta	DISP3	chr1	11474155	11542551
DIXDC1_chr11_111932343_112027653	1/1	t0001	3775	82	9	14	45	1	11	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0002	3776	78	7	14	44	2	11	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0003	3775	22	18	4	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0004	3776	12	11	1	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0005	3774	12	12	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0006	3777	9	1	1	6	0	1	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0007	3775	6	6	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0008	3776	6	0	0	6	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0009	3776	6	6	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0010	3776	4	1	1	2	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0011	3776	4	3	1	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0012	3776	3	3	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0013	3775	3	0	0	3	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0014	3775	2	0	2	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653