JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DIXDC1_chr11_111932343_112027653	0/0	t0015	3776	2	2	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0016	3776	2	1	1	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0017	3775	2	0	2	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0018	3774	2	0	1	1	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0019	3776	2	2	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0020	3775	2	2	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0021	3776	1	0	0	1	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0022	3775	1	0	0	0	1	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0023	3777	1	1	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0024	3776	1	0	0	1	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0025	3774	1	1	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0026	3774	1	1	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0027	3776	1	0	1	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0028	3775	1	0	0	1	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0029	3775	1	0	0	1	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0030	3776	1	1	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0031	3776	1	0	0	1	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0032	3776	1	0	0	0	0	1	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0033	3777	1	1	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0034	3776	1	1	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0035	3777	1	1	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0036	3776	1	1	0	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DIXDC1_chr11_111932343_112027653	0/0	t0037	3776	1	0	1	0	0	0	copy fasta	DIXDC1	chr11	111932343	112027653
DKC1_chrX_154757864_154782689	1/1	t0001	925	238	60	44	105	8	19	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	t0002	925	33	0	14	6	1	12	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	t0003	925	10	9	1	0	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	t0004	925	3	3	0	0	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	t0005	925	1	0	1	0	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	t0006	925	1	0	0	1	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	t0007	925	1	0	0	1	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	t0008	925	1	0	0	1	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKC1_chrX_154757864_154782689	0/0	t0009	924	1	0	0	1	0	0	copy fasta	DKC1	chrX	154757864	154782689
DKK1_chr10_52309281_52322657	1/1	t0001	1005	384	80	64	184	14	40	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	t0002	1005	11	5	3	1	0	2	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	t0003	1004	8	7	1	0	0	0	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	t0004	1005	2	0	1	0	0	1	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	t0005	987	1	0	0	0	0	1	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	t0006	1005	1	1	0	0	0	0	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	t0007	1005	1	0	0	1	0	0	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	t0008	1005	1	1	0	0	0	0	copy fasta	DKK1	chr10	52309281	52322657
DKK1_chr10_52309281_52322657	0/0	t0009	1005	1	0	1	0	0	0	copy fasta	DKK1	chr10	52309281	52322657
DKK2_chr4_106916802_107041313	1/1	t0001	2875	100	24	24	36	5	9	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0002	2875	48	20	4	18	1	5	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0003	2875	21	1	4	10	3	3	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0004	2875	9	1	1	2	0	5	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0005	2875	8	8	0	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0006	2875	6	0	4	0	1	1	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0007	2875	3	0	0	2	0	1	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0008	2875	3	0	0	3	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0009	2875	2	2	0	0	0	0	copy fasta	DKK2	chr4	106916802	107041313