JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DKK2_chr4_106916802_107041313	0/0	t0010	2875	2	0	0	2	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0011	2875	2	0	2	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0012	2875	2	2	0	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0013	2875	1	1	0	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0014	2875	1	1	0	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0015	2875	1	1	0	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0016	2875	1	1	0	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0017	2875	1	1	0	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0018	2875	1	0	0	1	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0019	2875	1	0	1	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0020	2875	1	1	0	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0021	2875	1	0	1	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0022	2875	1	0	1	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0023	2875	1	1	0	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK2_chr4_106916802_107041313	0/0	t0024	2875	1	1	0	0	0	0	copy fasta	DKK2	chr4	106916802	107041313
DKK3_chr11_11958036_12013626	1/0	t0001	1473	350	90	55	153	12	39	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	t0002	1467	49	2	11	29	3	4	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/1	t0003	1473	4	0	0	0	1	2	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	t0004	1473	4	0	0	4	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	t0005	1473	1	1	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	t0006	1473	1	0	0	1	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	t0007	1473	1	1	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	t0008	1473	1	0	0	1	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	t0009	1473	1	0	0	0	0	1	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	t0010	1473	1	1	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	t0011	1473	1	0	1	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	t0012	1473	1	0	1	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK3_chr11_11958036_12013626	0/0	t0013	1473	1	1	0	0	0	0	copy fasta	DKK3	chr11	11958036	12013626
DKK4_chr8_42369063_42382229	1/1	t0001	222	370	93	53	164	12	46	copy fasta	DKK4	chr8	42369063	42382229
DKK4_chr8_42369063_42382229	0/0	t0002	222	6	3	3	0	0	0	copy fasta	DKK4	chr8	42369063	42382229
DKK4_chr8_42369063_42382229	0/0	t0003	222	2	0	0	2	0	0	copy fasta	DKK4	chr8	42369063	42382229
DKK4_chr8_42369063_42382229	0/0	t0004	222	2	0	0	2	0	0	copy fasta	DKK4	chr8	42369063	42382229
DKKL1_chr19_49358877_49380116	1/1	t0001	211	395	94	72	176	14	37	copy fasta	DKKL1	chr19	49358877	49380116
DKKL1_chr19_49358877_49380116	0/0	t0002	211	1	0	0	0	0	1	copy fasta	DKKL1	chr19	49358877	49380116
DLAT_chr11_112020408_112069404	1/1	t0001	1935	125	11	28	59	8	17	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0002	1935	113	8	22	68	2	13	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0003	1939	22	20	2	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0004	1935	21	16	5	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0005	1939	12	11	1	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0006	1935	12	12	0	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0007	1935	11	8	3	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0008	1935	6	0	0	6	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0009	1939	3	2	1	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0010	1939	2	2	0	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0011	1935	1	1	0	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0012	1935	1	0	0	1	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0013	1935	1	0	1	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0014	1939	1	1	0	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0015	1935	1	0	1	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0016	1935	1	1	0	0	0	0	copy fasta	DLAT	chr11	112020408	112069404