JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLAT_chr11_112020408_112069404	0/0	t0017	1935	1	0	0	1	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0018	1939	1	1	0	0	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLAT_chr11_112020408_112069404	0/0	t0019	1935	1	0	0	1	0	0	copy fasta	DLAT	chr11	112020408	112069404
DLC1_chr8_13078361_13519851	0/0	t0001	2826	39	3	15	5	4	12	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/1	t0002	2825	32	0	11	12	2	6	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0003	2825	27	13	2	3	0	9	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0004	2825	14	1	4	7	0	2	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0005	2825	9	8	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0006	2826	8	0	2	6	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	1/0	t0007	2826	7	5	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0008	2826	6	5	0	0	1	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0009	2825	4	3	0	0	1	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0010	2824	4	4	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0011	2825	4	4	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0012	2826	4	0	1	1	0	2	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0013	2825	3	3	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0014	2826	3	0	0	3	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0015	2824	3	3	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0016	2826	3	1	0	0	0	2	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0017	2825	3	3	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0018	2824	2	0	0	0	1	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0019	2825	2	1	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0020	2825	2	1	0	1	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0021	2826	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0022	2825	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0023	2825	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0024	2826	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0025	2828	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0026	2825	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0027	2824	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0028	2825	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0029	2825	1	0	0	1	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0030	2825	1	0	0	1	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0031	2825	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0032	2825	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0033	2826	1	0	0	1	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0034	2826	1	0	0	1	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0035	2826	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0036	2828	1	0	0	0	1	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0037	2825	1	0	0	0	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0038	2825	1	0	0	1	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0039	2826	1	0	0	1	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0040	2824	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0041	2824	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0042	2824	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0043	2826	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0044	2826	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0045	2826	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0046	2824	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0047	2824	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851