JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLC1_chr8_13078361_13519851	0/0	t0048	2825	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0049	2826	1	0	0	1	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0050	2828	1	1	0	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0051	2825	1	0	0	1	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0052	2824	1	0	1	0	0	0	copy fasta	DLC1	chr8	13078361	13519851
DLC1_chr8_13078361_13519851	0/0	t0053	2826	1	0	0	0	0	1	copy fasta	DLC1	chr8	13078361	13519851
DLD_chr7_107886183_107926198	0/1	t0001	2008	118	8	29	71	3	6	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0002	2008	103	1	12	72	3	15	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	1/0	t0003	2008	91	13	28	26	10	13	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0004	2008	64	55	5	0	0	4	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0005	2008	5	5	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0006	2007	4	4	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0007	2008	3	3	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0008	2008	3	0	0	3	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0009	2008	2	2	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0010	2008	2	0	0	2	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0011	2008	2	1	1	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0012	2008	1	1	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0013	2008	1	1	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0014	2008	1	1	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0015	2008	1	1	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0016	2008	1	0	1	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0017	2008	1	1	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0018	2008	1	1	0	0	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0019	2008	1	0	0	1	0	0	copy fasta	DLD	chr7	107886183	107926198
DLD_chr7_107886183_107926198	0/0	t0020	2008	1	0	0	1	0	0	copy fasta	DLD	chr7	107886183	107926198
DLEC1_chr3_38034208_38129025	0/0	t0001	1632	235	35	44	119	10	27	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	t0002	1629	31	20	9	0	1	1	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	t0003	1632	18	11	3	1	1	2	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	t0004	1633	6	6	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	t0005	1630	3	3	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	t0006	1629	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	t0007	1617	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	t0008	1632	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	t0009	1632	1	1	0	0	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEC1_chr3_38034208_38129025	0/0	t0010	1633	1	0	0	1	0	0	copy fasta	DLEC1	chr3	38034208	38129025
DLEU7_chr13_50817905_50848692	1/0	t0001	456	225	48	44	94	4	34	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/1	t0002	456	120	15	26	60	8	10	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	t0003	456	62	19	9	30	2	2	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	t0004	456	14	13	1	0	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	t0005	456	4	0	0	4	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	t0006	456	2	0	0	2	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	t0007	456	2	0	0	2	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	t0008	456	1	0	0	1	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	t0009	456	1	0	0	1	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLEU7_chr13_50817905_50848692	0/0	t0010	456	1	1	0	0	0	0	copy fasta	DLEU7	chr13	50817905	50848692
DLG1_chr3_197037560_197303612	0/0	t0001	2169	113	7	27	57	8	14	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	1/0	t0002	2172	91	18	22	42	3	5	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/1	t0003	2169	59	18	11	19	1	9	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0004	2169	36	24	3	3	1	5	copy fasta	DLG1	chr3	197037560	197303612