Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AFAP1_chr4_7753714_7944861	0/0	t0017	5260	4	3	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0018	5261	3	3	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0019	5260	3	0	3	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0020	5260	3	0	0	3	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0021	5260	3	0	0	0	0	3	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0022	5261	2	2	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0023	5261	2	0	0	2	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0024	5258	2	2	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0025	5261	2	2	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0026	5261	2	0	0	0	1	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0027	5261	2	2	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0028	5260	2	2	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0029	5260	2	0	0	0	0	2	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0030	5260	2	2	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0031	5260	2	0	0	0	1	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0032	5260	2	0	1	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0033	5260	2	2	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0034	5260	2	2	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0035	5260	2	0	2	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0036	5260	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0037	5260	1	0	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0038	5261	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0039	5261	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0040	5261	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0041	5265	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0042	5265	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0043	5261	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0044	5261	1	0	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0045	5261	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0046	5261	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0047	5261	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0048	5260	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0049	5260	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0050	5260	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0051	5260	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0052	5260	1	0	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0053	5260	1	0	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0054	5260	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0055	5260	1	0	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0056	5260	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0057	5260	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0058	5260	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0059	5260	1	0	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0060	5260	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0061	5260	1	0	0	0	0	1	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0062	5260	1	0	0	0	1	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0063	5260	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0064	5260	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0065	5260	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0066	5260	1	0	0	0	1	0	copy fasta	AFAP1	chr4	7753714	7944861