JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLG1_chr3_197037560_197303612	0/0	t0005	2169	10	10	0	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0006	2176	5	0	2	0	2	1	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0007	2164	3	3	0	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0008	2169	2	0	1	0	0	1	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0009	2169	2	0	0	0	1	1	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0010	2173	2	0	0	0	0	2	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0011	2169	1	0	0	1	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0012	2169	1	0	1	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0013	2169	1	0	1	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0014	2173	1	0	0	1	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0015	2169	1	0	0	1	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0016	2172	1	1	0	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0017	2168	1	1	0	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0018	2164	1	1	0	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG1_chr3_197037560_197303612	0/0	t0019	2169	1	1	0	0	0	0	copy fasta	DLG1	chr3	197037560	197303612
DLG2_chr11_83450173_85632344	0/0	t0001	5033	4	4	0	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG2_chr11_83450173_85632344	0/0	t0002	5034	1	1	0	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG2_chr11_83450173_85632344	0/0	t0003	5033	1	1	0	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG2_chr11_83450173_85632344	0/0	t0004	5033	1	0	1	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG2_chr11_83450173_85632344	0/0	t0005	5033	1	1	0	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG2_chr11_83450173_85632344	0/0	t0006	5033	1	1	0	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG2_chr11_83450173_85632344	0/0	t0007	5033	1	0	1	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG2_chr11_83450173_85632344	0/0	t0008	5033	1	1	0	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG2_chr11_83450173_85632344	0/0	t0009	5032	1	1	0	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG2_chr11_83450173_85632344	0/0	t0010	5033	1	1	0	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG2_chr11_83450173_85632344	0/0	t0011	5034	1	1	0	0	0	0	copy fasta	DLG2	chr11	83450173	85632344
DLG3_chrX_70439835_70510490	0/0	t0001	3589	106	38	13	46	3	6	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	1/0	t0002	3589	101	5	15	63	6	11	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0003	3589	12	1	6	0	1	4	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0004	3589	7	7	0	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0005	3590	7	5	2	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0006	3590	5	0	0	3	0	2	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0007	3595	4	4	0	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0008	3588	4	0	0	4	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0009	3577	4	0	4	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0010	3590	3	0	1	0	0	2	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0011	3589	3	3	0	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/1	t0012	3589	3	0	1	0	1	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0013	3592	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0014	3590	1	0	0	0	0	1	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0015	3590	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0016	3589	1	0	0	0	0	1	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0017	3590	1	0	1	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0018	3589	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0019	3591	1	1	0	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0020	3587	1	1	0	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0021	3589	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0022	3589	1	1	0	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0023	3589	1	0	0	0	0	1	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0024	3589	1	0	1	0	0	0	copy fasta	DLG3	chrX	70439835	70510490