JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLG3_chrX_70439835_70510490	0/0	t0025	3589	1	1	0	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0026	3590	1	0	0	0	0	1	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0027	3590	1	1	0	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0028	3591	1	1	0	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0029	3587	1	1	0	0	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0030	3590	1	0	0	0	0	1	copy fasta	DLG3	chrX	70439835	70510490
DLG3_chrX_70439835_70510490	0/0	t0031	3597	1	0	0	1	0	0	copy fasta	DLG3	chrX	70439835	70510490
DLG4_chr17_7182187_7222627	0/0	t0001	4000	25	1	7	17	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0002	3999	13	6	1	6	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0003	4000	13	0	5	6	1	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0004	3999	8	4	3	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0005	3999	8	0	2	5	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0006	4000	8	0	0	6	0	2	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0007	4001	7	3	1	3	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0008	4002	6	1	0	2	2	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0009	4003	6	0	0	6	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0010	4001	6	0	3	2	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0011	4003	6	1	5	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0012	4002	5	0	2	3	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0013	3997	4	0	0	4	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0014	4000	4	4	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0015	4000	3	0	1	1	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0016	4003	3	0	0	3	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0017	3998	3	3	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0018	4000	3	1	0	1	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0019	4007	3	1	0	0	2	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0020	4012	3	0	1	0	2	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0021	4003	3	0	1	2	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0022	3999	3	1	1	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0023	4005	3	0	1	0	1	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0024	4001	3	0	1	2	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0025	4006	2	0	0	0	0	2	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0026	4000	2	0	0	2	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0027	3995	2	0	0	2	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0028	3997	2	2	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0029	4001	2	2	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0030	4003	2	2	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0031	3998	2	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0032	4006	2	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0033	4007	2	0	0	2	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0034	3998	2	0	0	2	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0035	4003	2	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0036	3996	2	2	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0037	4004	2	0	0	1	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0038	4000	2	0	2	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0039	3997	2	0	0	1	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0040	3999	2	2	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0041	4004	2	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0042	4010	2	2	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0043	4000	2	0	0	0	1	1	copy fasta	DLG4	chr17	7182187	7222627