JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLG4_chr17_7182187_7222627	0/0	t0044	4003	2	2	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0045	4000	2	0	0	2	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0046	4007	2	0	1	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0047	4004	2	0	2	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0048	4001	2	0	2	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0049	4000	2	0	0	2	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0050	4002	2	0	0	2	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0051	3999	2	0	1	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0052	4000	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0053	4000	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0054	3998	1	0	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0055	3994	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0056	4003	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0057	4002	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0058	3999	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0059	3999	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0060	4005	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0061	3995	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0062	4002	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0063	3998	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0064	4001	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0065	4004	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0066	4002	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0067	3998	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0068	3997	1	0	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0069	3999	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0070	3996	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0071	3997	1	0	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0072	3999	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0073	3998	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0074	4003	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0075	3995	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0076	4001	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0077	3997	1	0	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0078	4006	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0079	3999	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0080	4001	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0081	3999	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0082	4008	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0083	3995	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0084	3999	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0085	3995	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0086	3998	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0087	3998	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0088	4007	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0089	4009	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0090	4004	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0091	3999	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0092	3999	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0093	4003	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627