JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
DLG4_chr17_7182187_7222627	0/0	t0144	4003	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0145	4002	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0146	4001	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0147	3999	1	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0148	4024	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0149	4015	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0150	4012	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0151	4014	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0152	4009	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0153	4013	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0154	4000	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0155	3996	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0156	4003	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0157	4009	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0158	4001	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0159	4000	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0160	3997	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0161	4006	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0162	4000	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0163	3997	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0164	4000	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0165	3999	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0166	4002	1	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0167	4006	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0168	4003	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0169	4000	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0170	4003	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0171	4001	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0172	3997	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0173	3996	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0174	4001	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0175	4000	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0176	4000	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0177	4007	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0178	3999	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0179	4001	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0180	4004	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0181	4001	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0182	4008	1	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0183	4004	1	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0184	3999	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0185	3999	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0186	3999	1	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0187	4002	1	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0188	4002	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0189	4005	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0190	4001	1	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0191	4000	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0192	3998	1	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0193	3996	1	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627