JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLG4_chr17_7182187_7222627	0/0	t0194	3999	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0195	4004	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0196	4001	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0197	3999	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0198	4007	1	0	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0199	4005	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0200	4003	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0201	3999	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0202	4004	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0203	4000	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0204	3999	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0205	4002	1	0	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0206	4002	1	0	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0207	3998	1	0	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0208	4002	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0209	4007	1	0	0	0	1	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0210	4002	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0211	4004	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0212	4006	1	1	0	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0213	4004	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0214	4006	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0215	4000	1	0	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0216	4008	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0217	4007	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0218	4001	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0219	4004	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0220	4002	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0221	4000	1	0	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0222	4001	1	0	0	0	0	1	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0223	4000	1	0	0	1	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG4_chr17_7182187_7222627	0/0	t0224	4004	1	0	1	0	0	0	copy fasta	DLG4	chr17	7182187	7222627
DLG5_chr10_77785791_77931755	0/1	t0001	1885	106	28	22	42	3	10	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0002	1885	83	9	23	36	3	12	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0003	1885	56	9	6	32	2	7	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0004	1886	34	5	2	27	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0005	1885	7	7	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0006	1885	6	6	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0007	1885	5	5	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0008	1885	3	3	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0009	1885	3	0	1	0	0	2	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0010	1884	2	2	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0011	1884	2	2	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0012	1885	2	1	1	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0013	1886	2	1	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0014	1885	2	2	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0015	1884	2	0	0	2	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0016	1885	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0017	1885	1	0	0	0	0	1	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0018	1885	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0019	1885	1	0	0	0	0	1	copy fasta	DLG5	chr10	77785791	77931755