JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLG5_chr10_77785791_77931755	0/0	t0020	1885	1	0	0	0	0	1	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0021	1904	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0022	1885	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0023	1886	1	0	1	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0024	1885	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0025	1885	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0026	1885	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0027	1886	1	0	0	1	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0028	1885	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0029	1885	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0030	1886	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLG5_chr10_77785791_77931755	0/0	t0031	1885	1	1	0	0	0	0	copy fasta	DLG5	chr10	77785791	77931755
DLGAP1_chr18_3491032_4460307	0/0	t0001	3722	10	6	3	0	0	1	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0002	3723	7	5	0	2	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0003	3725	6	5	1	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0004	3724	5	1	0	1	2	1	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0005	3722	4	2	1	0	1	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0006	3723	2	0	2	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0007	3722	2	1	0	0	0	1	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0008	3723	2	2	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0009	3722	2	0	1	0	0	1	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0010	3723	2	1	0	0	0	1	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0011	3722	2	1	0	0	0	1	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0012	3722	2	2	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0013	3725	2	2	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0014	3726	2	2	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0015	3725	2	2	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0016	3727	2	1	0	0	1	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0017	3724	1	0	1	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0018	3723	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0019	3723	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0020	3723	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0021	3722	1	0	0	1	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0022	3723	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0023	3722	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0024	3722	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0025	3722	1	0	1	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0026	3724	1	0	1	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0027	3723	1	0	1	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0028	3722	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0029	3722	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0030	3724	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0031	3726	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0032	3726	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0033	3725	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0034	3727	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0035	3726	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0036	3726	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0037	3725	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0038	3725	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307