JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLGAP1_chr18_3491032_4460307	0/0	t0039	3726	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0040	3725	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0041	3723	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP1_chr18_3491032_4460307	0/0	t0042	3722	1	1	0	0	0	0	copy fasta	DLGAP1	chr18	3491032	4460307
DLGAP2_chr8_732628_1713476	0/0	t0001	7251	6	3	3	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0002	7252	4	3	0	0	0	1	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0003	7252	3	0	1	0	0	2	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0004	7252	2	0	1	1	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0005	7251	2	2	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0006	7257	2	2	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0007	7251	1	0	0	0	0	1	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0008	7252	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0009	7251	1	0	0	1	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0010	7252	1	0	0	0	0	1	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0011	7252	1	0	1	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0012	7251	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0013	7251	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0014	7252	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0015	7251	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0016	7251	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0017	7251	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0018	7251	1	0	0	0	0	1	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0019	7252	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0020	7251	1	0	0	1	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0021	7252	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0022	7251	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0023	7251	1	0	1	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0024	7252	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0025	7252	1	0	1	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0026	7251	1	0	0	1	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP2_chr8_732628_1713476	0/0	t0027	7251	1	1	0	0	0	0	copy fasta	DLGAP2	chr8	732628	1713476
DLGAP3_chr1_34860436_34934650	1/1	t0001	982	222	60	50	68	10	32	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	t0002	982	17	15	2	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	t0003	981	8	8	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	t0004	982	5	0	5	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	t0005	982	5	5	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	t0006	982	5	4	1	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	t0007	982	2	0	0	2	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	t0008	981	1	1	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP3_chr1_34860436_34934650	0/0	t0009	982	1	1	0	0	0	0	copy fasta	DLGAP3	chr1	34860436	34934650
DLGAP4_chr20_36301339_36533633	0/1	t0001	2080	38	10	10	11	3	3	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0002	2081	32	7	8	9	1	7	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	1/0	t0003	2080	19	0	6	9	0	3	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0004	2082	16	15	1	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0005	2081	3	0	1	0	0	2	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0006	2081	3	2	1	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0007	2080	3	1	1	0	0	1	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0008	2080	3	3	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0009	2080	2	0	0	0	0	2	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0010	2079	2	0	0	2	0	0	copy fasta	DLGAP4	chr20	36301339	36533633