JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLGAP4_chr20_36301339_36533633	0/0	t0011	2080	2	2	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0012	2082	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0013	2081	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0014	2080	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0015	2080	1	0	1	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0016	2080	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0017	2081	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0018	2080	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0019	2081	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0020	2081	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0021	2080	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0022	2080	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0023	2079	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0024	2080	1	0	0	1	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0025	2081	1	0	1	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0026	2081	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0027	2079	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0028	2081	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0029	2080	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0030	2081	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0031	2081	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP4_chr20_36301339_36533633	0/0	t0032	2081	1	1	0	0	0	0	copy fasta	DLGAP4	chr20	36301339	36533633
DLGAP5_chr14_55143135_55196585	1/1	t0001	340	315	64	55	148	10	36	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	t0002	340	38	16	5	13	0	4	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	t0003	340	8	8	0	0	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLGAP5_chr14_55143135_55196585	0/0	t0004	340	1	0	0	1	0	0	copy fasta	DLGAP5	chr14	55143135	55196585
DLK1_chr14_100721892_100743224	0/0	t0001	3507	150	17	28	86	4	15	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0002	3507	47	11	2	31	0	3	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/1	t0003	3506	45	3	22	1	7	11	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	1/0	t0004	3506	26	24	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0005	3505	15	1	0	14	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0006	3504	15	0	5	8	1	1	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0007	3507	11	2	2	4	0	3	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0008	3506	10	1	0	8	0	1	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0009	3507	10	0	1	6	2	1	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0010	3507	8	2	5	0	1	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0011	3507	7	6	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0012	3506	6	6	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0013	3507	4	2	0	2	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0014	3507	4	4	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0015	3508	4	1	0	2	0	1	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0016	3507	3	0	0	3	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0017	3507	3	3	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0018	3505	3	0	0	3	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0019	3508	3	1	0	2	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0020	3505	3	0	0	0	0	3	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0021	3506	3	1	2	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0022	3507	2	0	0	0	0	2	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0023	3508	2	2	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0024	3508	2	2	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224