JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLK1_chr14_100721892_100743224	0/0	t0025	3506	2	0	0	2	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0026	3507	2	0	2	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0027	3508	2	0	0	2	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0028	3508	2	1	0	0	0	1	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0029	3505	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0030	3507	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0031	3507	1	1	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0032	3506	1	1	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0033	3507	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0034	3506	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0035	3508	1	0	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0036	3505	1	0	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0037	3506	1	0	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0038	3507	1	1	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0039	3507	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0040	3507	1	0	0	0	0	1	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0041	3506	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0042	3506	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0043	3507	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0044	3507	1	0	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0045	3507	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0046	3438	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0047	3507	1	1	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0048	3507	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0049	3508	1	0	0	0	1	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0050	3507	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0051	3505	1	1	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0052	3507	1	0	0	0	0	1	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0053	3506	1	0	1	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0054	3506	1	1	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0055	3507	1	1	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0056	3507	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0057	3507	1	0	0	1	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK1_chr14_100721892_100743224	0/0	t0058	3507	1	1	0	0	0	0	copy fasta	DLK1	chr14	100721892	100743224
DLK2_chr6_43445352_43460548	1/1	t0001	397	367	97	66	158	9	35	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	t0002	397	1	0	0	0	1	0	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	t0003	397	1	1	0	0	0	0	copy fasta	DLK2	chr6	43445352	43460548
DLK2_chr6_43445352_43460548	0/0	t0004	397	1	0	0	0	0	1	copy fasta	DLK2	chr6	43445352	43460548
DLL1_chr6_170277206_170296078	0/1	t0001	1608	189	59	57	35	10	27	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	t0002	1608	99	5	6	82	0	6	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	t0003	1608	97	21	19	40	8	9	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	t0004	1608	10	0	0	10	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	t0005	1608	9	0	0	9	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	t0006	1608	2	2	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	t0007	1608	1	1	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	t0008	1608	1	0	0	0	0	1	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	t0009	1608	1	0	0	0	0	1	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	t0010	1582	1	0	0	1	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	t0011	1608	1	1	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL1_chr6_170277206_170296078	0/0	t0012	1608	1	1	0	0	0	0	copy fasta	DLL1	chr6	170277206	170296078