Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AFAP1_chr4_7753714_7944861	0/0	t0067	5260	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0068	5278	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0069	5260	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0070	5261	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0071	5258	1	0	1	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0072	5261	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0073	5260	1	1	0	0	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFAP1_chr4_7753714_7944861	0/0	t0074	5260	1	0	0	1	0	0	copy fasta	AFAP1	chr4	7753714	7944861
AFDN_chr6_167821911_167977023	1/1	t0001	2311	230	60	42	90	10	26	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0002	2312	60	1	18	35	1	5	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0003	2311	11	11	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0004	2311	3	3	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0005	2316	3	1	2	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0006	2311	2	2	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0007	2311	2	0	1	0	0	1	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0008	2293	2	2	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0009	2335	1	0	1	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0010	2311	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0011	2311	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0012	2311	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0013	2311	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0014	2311	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0015	2311	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0016	2311	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0017	2312	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0018	2259	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0019	2299	1	0	0	0	1	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0020	2311	1	1	0	0	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFDN_chr6_167821911_167977023	0/0	t0021	2311	1	0	0	1	0	0	copy fasta	AFDN	chr6	167821911	167977023
AFF1_chr4_86930011_87146039	0/1	t0001	5596	46	3	6	30	5	1	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0002	5594	40	2	6	22	2	8	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0003	5605	34	11	7	10	1	5	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0004	5603	26	0	4	17	1	4	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0005	5601	14	14	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0006	5591	10	1	4	0	1	4	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0007	5607	9	0	1	4	1	3	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0008	5594	8	8	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0009	5603	8	0	4	4	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0010	5603	7	0	0	7	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0011	5595	6	6	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0012	5596	4	0	4	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0013	5605	3	3	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0014	5596	3	0	0	3	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0015	5595	3	2	1	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0016	5594	3	3	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0017	5595	3	3	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0018	5594	2	0	1	0	1	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0019	5595	2	2	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0020	5594	2	2	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0021	5609	2	2	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039