JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLL1_chr6_170277206_170296078	0/0	t0013	1608	1	0	0	1	0	0	copy fasta	DLL1	chr6	170277206	170296078
DLL3_chr19_39493947_39513469	1/1	t0001	241	425	91	74	204	12	42	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	t0002	241	1	1	0	0	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	t0003	241	1	0	0	1	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL3_chr19_39493947_39513469	0/0	t0004	241	1	0	0	1	0	0	copy fasta	DLL3	chr19	39493947	39513469
DLL4_chr15_40924340_40944073	0/1	t0001	1368	178	36	37	79	4	21	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	1/0	t0002	1369	139	46	24	50	11	7	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0003	1367	31	8	5	3	1	14	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0004	1369	7	0	0	7	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0005	1369	2	0	0	1	0	1	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0006	1368	2	2	0	0	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0007	1368	1	0	0	1	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0008	1369	1	0	0	1	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0009	1367	1	0	0	0	0	1	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0010	1369	1	0	0	1	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0011	1367	1	1	0	0	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0012	1369	1	1	0	0	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0013	1367	1	0	0	0	0	1	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0014	1368	1	0	0	1	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0015	1368	1	0	0	1	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0016	1368	1	0	0	1	0	0	copy fasta	DLL4	chr15	40924340	40944073
DLL4_chr15_40924340_40944073	0/0	t0017	1369	1	0	0	0	0	1	copy fasta	DLL4	chr15	40924340	40944073
DLST_chr14_74876916_74908743	0/0	t0001	1452	120	28	25	47	2	18	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	1/0	t0002	1452	111	7	20	68	4	11	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0003	1452	94	20	20	45	3	6	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0004	1452	30	23	4	0	0	3	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0005	1452	6	5	0	0	0	1	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0006	1452	5	0	0	5	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0007	1452	5	0	0	3	0	2	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/1	t0008	1452	5	0	2	0	1	1	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0009	1452	5	0	0	5	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0010	1452	4	3	1	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0011	1452	1	1	0	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0012	1452	1	1	0	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0013	1452	1	0	0	1	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0014	1452	1	1	0	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0015	1452	1	1	0	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0016	1452	1	1	0	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLST_chr14_74876916_74908743	0/0	t0017	1452	1	1	0	0	0	0	copy fasta	DLST	chr14	74876916	74908743
DLX1_chr2_172080507_172094674	1/0	t0001	1589	248	23	50	137	7	30	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/1	t0002	1589	117	38	25	34	10	9	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0003	1589	20	19	1	0	0	0	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0004	1589	18	0	1	13	1	3	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0005	1583	5	5	0	0	0	0	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0006	1589	4	4	0	0	0	0	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0007	1589	4	4	0	0	0	0	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0008	1589	1	0	0	0	0	1	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0009	1589	1	0	1	0	0	0	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0010	1589	1	1	0	0	0	0	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0011	1589	1	0	0	1	0	0	copy fasta	DLX1	chr2	172080507	172094674