JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLX1_chr2_172080507_172094674	0/0	t0012	1589	1	0	0	1	0	0	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0013	1589	1	0	0	0	0	1	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0014	1589	1	0	0	1	0	0	copy fasta	DLX1	chr2	172080507	172094674
DLX1_chr2_172080507_172094674	0/0	t0015	1589	1	0	0	1	0	0	copy fasta	DLX1	chr2	172080507	172094674
DLX2_chr2_172094438_172107900	0/0	t0001	1468	230	41	30	127	5	27	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/1	t0002	1468	101	18	35	24	7	16	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	1/0	t0003	1468	33	31	1	0	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	t0004	1468	14	0	3	10	1	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	t0005	1468	3	3	0	0	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	t0006	1468	2	0	2	0	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	t0007	1468	2	2	0	0	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	t0008	1468	1	1	0	0	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	t0009	1468	1	0	0	0	1	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	t0010	1468	1	0	0	0	0	1	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	t0011	1468	1	0	1	0	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX2_chr2_172094438_172107900	0/0	t0012	1468	1	0	0	1	0	0	copy fasta	DLX2	chr2	172094438	172107900
DLX3_chr17_49985005_50000224	0/1	t0001	1739	163	26	51	48	13	24	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0002	1738	62	0	2	56	0	4	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0003	1739	48	8	6	29	0	5	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0004	1740	27	1	2	24	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	1/0	t0005	1739	23	19	1	0	0	2	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0006	1740	22	5	6	10	0	1	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0007	1739	11	0	0	11	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0008	1741	11	3	6	0	0	2	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0009	1738	7	7	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0010	1738	7	0	3	0	3	1	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0011	1738	4	3	1	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0012	1739	3	0	0	3	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0013	1739	3	3	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0014	1741	3	1	0	0	0	2	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0015	1739	2	0	0	2	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0016	1738	2	0	0	2	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0017	1739	2	2	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0018	1739	2	0	2	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0019	1739	2	2	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0020	1738	2	2	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0021	1739	2	0	0	2	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0022	1738	2	1	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0023	1739	2	0	0	2	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0024	1738	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0025	1739	1	0	1	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0026	1741	1	0	1	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0027	1738	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0028	1739	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0029	1738	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0030	1740	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0031	1741	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0032	1739	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0033	1740	1	0	0	0	0	1	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0034	1739	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224