JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLX3_chr17_49985005_50000224	0/0	t0035	1740	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0036	1738	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0037	1739	1	0	1	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0038	1739	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0039	1739	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0040	1737	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0041	1740	1	0	1	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0042	1739	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0043	1739	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0044	1739	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0045	1739	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0046	1740	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0047	1740	1	1	0	0	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0048	1738	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX3_chr17_49985005_50000224	0/0	t0049	1739	1	0	0	1	0	0	copy fasta	DLX3	chr17	49985005	50000224
DLX4_chr17_49964190_49979959	0/1	t0001	1298	208	39	42	87	9	30	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0002	1301	67	13	5	44	0	5	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0003	1302	34	2	3	22	3	4	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0004	1297	28	12	10	3	2	1	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0005	1301	10	7	0	0	0	3	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0006	1327	8	8	0	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0007	1297	8	8	0	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0008	1299	5	5	0	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0009	1297	5	4	1	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0010	1301	4	0	0	4	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0011	1299	4	0	0	2	0	2	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0012	1302	3	0	0	3	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0013	1298	3	0	0	3	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0014	1297	2	0	0	2	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0015	1298	2	0	1	0	0	1	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0016	1298	2	0	2	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0017	1298	2	0	0	2	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0018	1298	1	0	0	1	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	1/0	t0019	1296	1	0	0	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0020	1301	1	0	0	1	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0021	1302	1	1	0	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0022	1297	1	1	0	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0023	1297	1	0	1	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0024	1298	1	0	0	0	0	1	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0025	1297	1	0	0	0	0	1	copy fasta	DLX4	chr17	49964190	49979959
DLX4_chr17_49964190_49979959	0/0	t0026	1297	1	0	1	0	0	0	copy fasta	DLX4	chr17	49964190	49979959
DLX5_chr7_97015396_97029831	1/0	t0001	549	338	88	59	150	9	31	copy fasta	DLX5	chr7	97015396	97029831
DLX5_chr7_97015396_97029831	0/1	t0002	550	108	7	17	59	7	17	copy fasta	DLX5	chr7	97015396	97029831
DLX5_chr7_97015396_97029831	0/0	t0003	549	1	1	0	0	0	0	copy fasta	DLX5	chr7	97015396	97029831
DLX5_chr7_97015396_97029831	0/0	t0004	550	1	0	0	1	0	0	copy fasta	DLX5	chr7	97015396	97029831
DLX6_chr7_97000553_97016040	0/0	t0001	1418	101	30	18	40	3	10	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0002	1417	70	4	10	37	4	15	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0003	1421	40	2	10	24	0	4	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0004	1423	33	3	6	18	4	2	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/1	t0005	1418	30	10	4	7	1	7	copy fasta	DLX6	chr7	97000553	97016040