JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DLX6_chr7_97000553_97016040	0/0	t0006	1409	23	0	3	17	0	3	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0007	1419	22	2	7	12	0	1	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	1/0	t0008	1419	21	10	3	4	0	3	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0009	1422	18	15	2	0	0	1	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0010	1416	5	0	1	3	1	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0011	1420	5	0	2	3	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0012	1423	4	0	0	4	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0013	1419	4	0	1	3	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0014	1420	3	2	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0015	1418	2	0	0	2	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0016	1418	2	0	1	0	1	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0017	1422	2	2	0	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0018	1422	2	2	0	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0019	1420	2	1	0	0	0	1	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0020	1424	2	0	0	2	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0021	1424	2	0	0	2	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0022	1421	1	0	1	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0023	1416	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0024	1417	1	0	1	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0025	1417	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0026	1417	1	1	0	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0027	1417	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0028	1418	1	1	0	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0029	1418	1	1	0	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0030	1419	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0031	1419	1	0	0	0	0	1	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0032	1419	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0033	1423	1	1	0	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0034	1424	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0035	1421	1	1	0	0	0	0	copy fasta	DLX6	chr7	97000553	97016040
DLX6_chr7_97000553_97016040	0/0	t0036	1425	1	0	0	1	0	0	copy fasta	DLX6	chr7	97000553	97016040
DMAC1_chr9_7791500_7804778	0/0	t0001	2118	106	12	26	52	6	10	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/1	t0002	2115	64	10	9	32	3	9	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0003	2118	63	10	18	21	4	10	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	1/0	t0004	2118	45	3	2	35	0	4	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0005	2092	37	0	14	22	0	1	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0006	2117	35	2	3	25	2	3	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0007	2115	11	7	4	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0008	2117	10	8	0	2	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0009	2117	10	10	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0010	2119	9	0	0	7	0	2	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0011	2115	8	7	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0012	2117	6	0	4	0	1	1	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0013	2117	5	0	0	5	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0014	2117	5	4	1	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0015	2118	3	0	0	3	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0016	2114	3	3	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0017	2118	3	0	0	3	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0018	2118	3	3	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0019	2115	2	0	0	0	0	2	copy fasta	DMAC1	chr9	7791500	7804778