JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMAC1_chr9_7791500_7804778	0/0	t0020	2119	2	0	0	2	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0021	2118	2	0	0	2	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0022	2118	2	1	1	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0023	2117	2	2	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0024	2115	2	0	0	2	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0025	2118	2	0	0	0	2	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0026	2115	2	0	0	2	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0027	2118	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0028	2118	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0029	2118	1	0	0	0	0	1	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0030	2117	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0031	2115	1	0	0	0	0	1	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0032	2118	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0033	2118	1	0	0	0	0	1	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0034	2092	1	0	0	0	0	1	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0035	2118	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0036	2116	1	0	0	0	0	1	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0037	2118	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0038	2117	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0039	2091	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0040	2118	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0041	2116	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0042	2117	1	0	1	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0043	2117	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0044	2117	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0045	2115	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0046	2118	1	0	0	0	0	1	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0047	2118	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0048	2115	1	0	0	0	0	1	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0049	2114	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0050	2118	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0051	2117	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0052	2116	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0053	2116	1	0	1	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0054	2115	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0055	2117	1	1	0	0	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0056	2114	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0057	2118	1	0	0	1	0	0	copy fasta	DMAC1	chr9	7791500	7804778
DMAC1_chr9_7791500_7804778	0/0	t0058	2118	1	0	0	0	0	1	copy fasta	DMAC1	chr9	7791500	7804778
DMAC2L_chr14_50307324_50332957	0/1	t0001	2338	157	29	36	68	7	16	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	1/0	t0002	2342	34	0	3	15	4	11	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0003	2312	31	1	2	26	0	2	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0004	2342	27	19	6	0	2	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0005	2339	25	10	1	14	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0006	2341	24	4	12	1	3	4	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0007	2341	17	1	2	12	0	2	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0008	2312	13	0	0	13	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0009	2338	7	7	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0010	2343	5	0	0	1	0	4	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0011	2338	5	0	0	5	0	0	copy fasta	DMAC2L	chr14	50307324	50332957