JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMAC2L_chr14_50307324_50332957	0/0	t0012	2338	5	1	4	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0013	2350	4	1	2	0	0	1	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0014	2343	3	2	1	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0015	2313	3	0	1	2	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0016	2341	3	0	3	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0017	2338	3	3	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0018	2341	3	3	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0019	2339	2	0	0	2	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0020	2313	2	2	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0021	2342	2	0	0	1	0	1	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0022	2338	2	0	0	2	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0023	2339	2	1	1	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0024	2339	2	0	0	1	0	1	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0025	2339	2	2	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0026	2343	1	0	0	1	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0027	2329	1	0	1	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0028	2340	1	1	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0029	2340	1	0	0	0	0	1	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0030	2312	1	0	0	1	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0031	2314	1	0	0	1	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0032	2342	1	0	0	1	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0033	2337	1	1	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0034	2338	1	0	0	0	0	1	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0035	2338	1	0	0	1	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0036	2338	1	0	0	1	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0037	2338	1	0	0	1	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0038	2338	1	0	0	1	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0039	2338	1	1	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0040	2338	1	0	1	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0041	2339	1	1	0	0	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2L_chr14_50307324_50332957	0/0	t0042	2338	1	0	0	1	0	0	copy fasta	DMAC2L	chr14	50307324	50332957
DMAC2_chr19_41426318_41444912	1/1	t0001	927	409	87	71	183	16	50	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	t0002	927	5	4	1	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	t0003	927	3	2	1	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	t0004	927	3	3	0	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	t0005	927	1	0	0	1	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	t0006	927	1	1	0	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	t0007	927	1	1	0	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	t0008	927	1	1	0	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	t0009	927	1	1	0	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAC2_chr19_41426318_41444912	0/0	t0010	927	1	0	1	0	0	0	copy fasta	DMAC2	chr19	41426318	41444912
DMAP1_chr1_44208471_44225673	1/1	t0001	339	276	67	39	128	13	27	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	t0002	339	117	23	21	53	3	17	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	t0003	339	11	0	8	3	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	t0004	339	2	2	0	0	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMAP1_chr1_44208471_44225673	0/0	t0005	339	2	0	0	2	0	0	copy fasta	DMAP1	chr1	44208471	44225673
DMBT1_chr10_122555754_122648736	0/0	t0001	356	112	30	10	54	1	17	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	1/1	t0002	356	106	17	24	40	9	14	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	t0003	356	45	12	8	17	4	4	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	t0004	356	13	0	2	9	0	2	copy fasta	DMBT1	chr10	122555754	122648736