JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMBT1_chr10_122555754_122648736	0/0	t0005	356	2	2	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	t0006	356	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	t0007	356	1	0	0	1	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	t0008	356	1	0	0	0	0	1	copy fasta	DMBT1	chr10	122555754	122648736
DMBT1_chr10_122555754_122648736	0/0	t0009	356	1	1	0	0	0	0	copy fasta	DMBT1	chr10	122555754	122648736
DMBX1_chr1_46484836_46521216	0/0	t0001	3925	69	8	5	46	0	10	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0002	3917	51	6	4	32	2	7	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0003	3917	44	3	6	27	0	8	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0004	3919	44	29	4	10	0	1	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0005	3918	35	1	0	29	0	5	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0006	3916	26	4	15	3	3	1	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0007	3917	20	5	3	12	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0008	3918	17	1	3	12	1	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0009	3916	16	0	10	0	4	2	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	1/1	t0010	3917	12	2	4	0	2	2	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0011	3919	11	0	0	11	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0012	3919	8	8	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0013	3917	8	0	7	1	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0014	3917	7	0	2	5	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0015	3917	6	5	1	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0016	3916	4	1	0	2	1	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0017	3918	3	3	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0018	3919	3	3	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0019	3916	3	3	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0020	3918	2	0	0	1	1	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0021	3917	2	1	0	1	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0022	3918	2	0	0	2	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0023	3917	2	2	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0024	3916	2	0	1	0	1	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0025	3916	2	0	2	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0026	3918	2	2	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0027	3925	2	0	0	2	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0028	3925	2	1	0	1	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0029	3924	2	2	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0030	3918	2	0	0	0	0	2	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0031	3916	2	2	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0032	3917	1	1	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0033	3919	1	1	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0034	3916	1	0	1	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0035	3917	1	0	0	1	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0036	3918	1	0	0	1	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0037	3917	1	0	0	1	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0038	3916	1	0	0	0	0	1	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0039	3918	1	0	0	1	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0040	3917	1	0	1	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0041	3916	1	0	0	0	1	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0042	3916	1	0	1	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0043	3917	1	1	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0044	3925	1	0	0	1	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0045	3918	1	0	0	0	0	1	copy fasta	DMBX1	chr1	46484836	46521216