JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMBX1_chr1_46484836_46521216	0/0	t0046	3917	1	0	0	0	0	1	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0047	3917	1	0	0	0	0	1	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0048	3917	1	1	0	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0049	3917	1	0	1	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMBX1_chr1_46484836_46521216	0/0	t0050	3918	1	0	1	0	0	0	copy fasta	DMBX1	chr1	46484836	46521216
DMC1_chr22_38513948_38575183	1/1	t0001	1247	239	49	52	102	8	26	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	t0002	1246	57	24	0	32	0	1	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	t0003	1248	16	7	4	4	0	1	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	t0004	1247	6	6	0	0	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	t0005	1248	2	0	0	2	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	t0006	1234	1	0	0	1	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	t0007	1246	1	1	0	0	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	t0008	1247	1	0	0	1	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMC1_chr22_38513948_38575183	0/0	t0009	1247	1	1	0	0	0	0	copy fasta	DMC1	chr22	38513948	38575183
DMD_chrX_31114222_33216549	0/0	t0001	2935	71	5	18	33	3	12	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0002	2943	11	3	3	4	1	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0003	2948	5	0	0	3	0	2	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0004	2949	3	3	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0005	2939	3	0	0	3	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0006	2938	2	2	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0007	2936	2	1	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0008	2935	2	0	0	0	0	2	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0009	2935	2	1	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0010	2927	2	2	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0011	2931	2	2	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0012	2939	2	2	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0013	2947	2	0	0	2	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0014	2931	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0015	2945	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0016	2939	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0017	2935	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0018	2939	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0019	2943	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0020	2943	1	0	1	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0021	2936	1	0	0	0	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0022	2936	1	0	0	0	0	1	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0023	2939	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0024	2947	1	0	0	1	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0025	2932	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0026	2939	1	0	0	0	1	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0027	2959	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0028	2951	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0029	2940	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMD_chrX_31114222_33216549	0/0	t0030	2926	1	1	0	0	0	0	copy fasta	DMD	chrX	31114222	33216549
DMGDH_chr5_78992564_79074674	1/1	t0001	573	350	88	62	142	14	42	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	t0002	573	16	0	0	16	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMGDH_chr5_78992564_79074674	0/0	t0003	573	6	6	0	0	0	0	copy fasta	DMGDH	chr5	78992564	79074674
DMKN_chr19_35492220_35518649	1/1	t0001	494	404	62	80	199	15	46	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	t0002	494	15	14	1	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	t0003	494	10	10	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649