JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMKN_chr19_35492220_35518649	0/0	t0004	494	10	10	0	0	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	t0005	494	2	0	1	0	1	0	copy fasta	DMKN	chr19	35492220	35518649
DMKN_chr19_35492220_35518649	0/0	t0006	494	1	0	0	1	0	0	copy fasta	DMKN	chr19	35492220	35518649
DMP1_chr4_87645280_87669357	0/1	t0001	1163	135	21	21	82	3	7	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0002	1162	82	12	18	39	3	10	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	1/0	t0003	1164	55	7	10	24	3	10	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0004	1162	51	4	14	26	3	4	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0005	1163	29	2	2	24	1	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0006	1162	25	21	4	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0007	1162	13	4	1	2	1	5	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0008	1163	10	10	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0009	1163	8	8	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0010	1164	6	2	0	1	0	3	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0011	1162	3	3	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0012	1161	3	0	2	0	0	1	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0013	1162	2	0	1	0	0	1	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0014	1163	1	0	0	1	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0015	1162	1	1	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0016	1164	1	0	0	1	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0017	1163	1	0	0	1	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0018	1163	1	0	0	0	0	1	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0019	1163	1	1	0	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0020	1162	1	0	1	0	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMP1_chr4_87645280_87669357	0/0	t0021	1163	1	0	0	1	0	0	copy fasta	DMP1	chr4	87645280	87669357
DMPK_chr19_45764717_45787490	0/1	t0001	865	95	20	19	44	3	8	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0002	889	72	8	29	29	2	4	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0003	886	68	14	4	42	3	5	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0004	883	64	5	17	26	3	13	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0005	880	16	9	5	1	1	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	1/0	t0006	910	15	0	1	8	2	3	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0007	892	11	1	2	3	2	3	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0008	895	9	0	0	9	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0009	892	8	8	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0010	898	7	0	0	5	0	2	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0011	889	5	5	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0012	913	5	0	3	2	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0013	883	5	5	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0014	925	3	0	1	2	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0015	874	3	3	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0016	931	2	0	0	2	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0017	889	2	0	0	2	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0018	877	2	0	0	1	0	1	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0019	871	2	2	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0020	889	1	0	1	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0021	895	1	1	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0022	871	1	1	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0023	883	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0024	946	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0025	936	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0026	937	1	0	0	0	0	1	copy fasta	DMPK	chr19	45764717	45787490