JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DMPK_chr19_45764717_45787490	0/0	t0027	934	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0028	922	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0029	892	1	1	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0030	889	1	1	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0031	888	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0032	889	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0033	886	1	0	0	0	0	1	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0034	886	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0035	887	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0036	880	1	1	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0037	880	1	1	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0038	874	1	0	0	0	0	1	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0039	868	1	1	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0040	865	1	0	0	1	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMPK_chr19_45764717_45787490	0/0	t0041	886	1	1	0	0	0	0	copy fasta	DMPK	chr19	45764717	45787490
DMRT1_chr9_836697_974090	0/0	t0001	1093	115	36	27	27	7	18	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0002	1094	44	16	9	19	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0003	1093	36	4	7	19	0	6	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/1	t0004	1095	32	11	5	9	4	2	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0005	1095	18	1	4	11	0	2	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0006	1094	15	2	1	12	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0007	1096	11	11	0	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	1/0	t0008	1094	7	0	4	0	2	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0009	1094	4	3	0	0	0	1	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0010	1095	4	4	0	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0011	1094	4	0	2	0	1	1	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0012	1093	3	0	3	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0013	1093	3	3	0	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0014	1093	2	0	0	2	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0015	1093	1	0	1	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0016	1093	1	0	1	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0017	1095	1	1	0	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0018	1093	1	0	0	1	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0019	1094	1	0	0	1	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0020	1095	1	1	0	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0021	1093	1	0	0	1	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT1_chr9_836697_974090	0/0	t0022	1095	1	1	0	0	0	0	copy fasta	DMRT1	chr9	836697	974090
DMRT2_chr9_1045357_1062552	0/0	t0001	743	200	27	17	127	6	23	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	1/0	t0002	743	82	14	22	35	3	7	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0003	743	43	10	15	16	1	1	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0004	743	39	13	4	22	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0005	743	26	7	7	10	2	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/1	t0006	743	23	8	1	13	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0007	743	15	0	6	0	0	9	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0008	743	13	0	6	2	3	2	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0009	743	12	3	0	8	0	1	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0010	743	3	3	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0011	743	3	0	0	2	0	1	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0012	743	3	0	1	0	1	1	copy fasta	DMRT2	chr9	1045357	1062552
DMRT2_chr9_1045357_1062552	0/0	t0013	743	2	2	0	0	0	0	copy fasta	DMRT2	chr9	1045357	1062552