Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AFF1_chr4_86930011_87146039	0/0	t0022	5583	2	2	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0023	5597	2	2	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0024	5591	2	0	2	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0025	5609	2	0	1	0	1	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0026	5603	2	0	0	0	0	2	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0027	5596	2	2	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0028	5596	2	2	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0029	5605	2	0	0	2	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0030	5603	2	0	0	2	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0031	5596	2	0	0	2	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0032	5595	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0033	5605	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	1/0	t0034	5605	1	0	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0035	5596	1	0	1	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0036	5596	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0037	5594	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0038	5594	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0039	5594	1	0	0	0	0	1	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0040	5594	1	0	0	0	0	1	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0041	5603	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0042	5605	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0043	5605	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0044	5600	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0045	5590	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0046	5599	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0047	5596	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0048	5606	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0049	5601	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0050	5596	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0051	5598	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0052	5603	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0053	5605	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0054	5591	1	0	1	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0055	5593	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0056	5595	1	0	1	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0057	5593	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0058	5591	1	0	1	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0059	5596	1	0	1	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0060	5599	1	0	1	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0061	5605	1	0	1	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0062	5599	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0063	5605	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0064	5603	1	0	0	0	0	1	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0065	5603	1	0	0	1	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0066	5591	1	0	0	0	1	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0067	5598	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0068	5605	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0069	5596	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF1_chr4_86930011_87146039	0/0	t0070	5599	1	1	0	0	0	0	copy fasta	AFF1	chr4	86930011	87146039
AFF2_chrX_148495617_149005663	0/0	t0001	9822	7	0	0	5	0	2	copy fasta	AFF2	chrX	148495617	149005663